View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4591-Insertion-2 (Length: 882)

Name: NF4591-Insertion-2
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4591-Insertion-2
NF4591-Insertion-2
[»] chr6 (3 HSPs)
chr6 (8-421)||(2918556-2918969)
chr6 (304-417)||(886484-886597)
chr6 (418-487)||(31444776-31444845)
[»] chr2 (6 HSPs)
chr2 (64-421)||(31412510-31412857)
chr2 (702-882)||(31413045-31413223)
chr2 (288-341)||(31079924-31079977)
chr2 (418-447)||(4453783-4453812)
chr2 (418-447)||(9208575-9208604)
chr2 (304-405)||(24401342-24401442)
[»] chr1 (7 HSPs)
chr1 (418-597)||(7608256-7608435)
chr1 (418-597)||(31771244-31771423)
chr1 (475-535)||(7608249-7608309)
chr1 (475-535)||(31771237-31771297)
chr1 (167-258)||(2952918-2953010)
chr1 (304-410)||(40901432-40901536)
chr1 (418-447)||(32440669-32440698)
[»] chr4 (4 HSPs)
chr4 (702-835)||(38014510-38014642)
chr4 (418-448)||(26720242-26720272)
chr4 (418-447)||(3649876-3649905)
chr4 (418-447)||(32651290-32651319)
[»] chr7 (3 HSPs)
chr7 (287-416)||(35858572-35858701)
chr7 (160-258)||(35858064-35858161)
chr7 (304-411)||(34790394-34790499)
[»] chr5 (1 HSPs)
chr5 (322-397)||(31941293-31941368)
[»] chr3 (4 HSPs)
chr3 (167-258)||(38611946-38612038)
chr3 (418-467)||(19766019-19766068)
chr3 (424-509)||(31687881-31687966)
chr3 (418-447)||(46233983-46234012)
[»] scaffold0152 (1 HSPs)
scaffold0152 (418-509)||(10200-10291)
[»] chr8 (4 HSPs)
chr8 (182-258)||(45463894-45463970)
chr8 (290-367)||(42884426-42884502)
chr8 (288-411)||(14755513-14755637)
chr8 (418-447)||(44663703-44663732)
[»] scaffold0057 (1 HSPs)
scaffold0057 (304-411)||(62624-62731)
[»] scaffold0003 (1 HSPs)
scaffold0003 (418-509)||(36966-37057)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Complemental strand, 2918969 - 2918556
Alignment:
Q  8 tttttgttatccattcatagctgccactataactaacaccaatgcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918969 tttttgttatccattcatagctgccactataactaacaccaatgcttattcatgtaccttctgttattcataactaagcaatgattacaaaactcaaaag 2918870  T
Q  108 gaataatggttaataatttcaggaatccccatgagttgcatatgttgttgaaagtcaaactaatcctaattaacattgcaatgacctaatcatactctaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918869 gaataatggttaataatttcaggaatccccatgagttgcatatgttgttgaaagtcaaactaatcctaattaacattgcaatgacctaatcatactctaa 2918770  T
Q  208 acctaattgttaggcgccaaactaggataaccggttgatctttaacctttgtttcaaatttaaaataaaaatactttgggttaaaataatctacaactat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918769 acctaattgttaggcgccaaactaggataaccggttgatctttaacctttgtttcaaatttaaaataaaaatactttgggttaaaataatctacaactat 2918670  T
Q  308 ttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaaagat 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2918669 ttatgtttgcttattatcataaaaattattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaagaagat 2918570  T
Q  408 actttaattgactt 421  Q
    ||||||||||||||    
T  2918569 actttaattgactt 2918556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 304 - 417
Target Start/End: Original strand, 886484 - 886597
Alignment:
Q  304 ctatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaa 403  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  886484 ctatttctgtttgcttactatcataaaaatcatttttagtttgttttgaaactcttacacttgatttcattgcatttataaaataaatagatttagaaaa 886583  T
Q  404 agatactttaattg 417  Q
    || |||||||||||    
T  886584 agctactttaattg 886597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 487
Target Start/End: Original strand, 31444776 - 31444845
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgccaa 487  Q
    ||||||||||||||||||||||||||||||  | ||||  ||||||||||||    ||||||||||||||    
T  31444776 acttattcctaatcctagttaacactccaattactacttaaaaccctaattctataattttaggcgccaa 31444845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-120; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 64 - 421
Target Start/End: Complemental strand, 31412857 - 31412510
Alignment:
Q  64 ccttctgttattcataactaagcaatgattacaaaactcaaaaggaataatggttaataatttcaggaatccccatgagttgcatatg-ttgttgaaagt 162  Q
    |||||||||||||||||||||||||||||||||           || ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||    
T  31412857 ccttctgttattcataactaagcaatgattaca-----------gagtaatggttattaatttcaggaatccccatgagttgcatatggttgttcaaagt 31412769  T
Q  163 caaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttgtttc 262  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  31412768 caaactaatcctaattaacattgcaatgatctaatcataccctaaacctaattgctaggcgccaaactacgataaccgtttgatctttaacctttgtttc 31412669  T
Q  263 aaatttaaaataaaaatactttgggttaaaataatctacaactatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaa--ctctta 360  Q
       ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |  ||||||    
T  31412668 ggctttaaaataaaaatattttgggttaaaataatctacaactattt-tgtttgcttattatcataaaaatcatttttagtttgttttgatactctctta 31412570  T
Q  361 cacttgatttcattgcaattataaaataaatagatttagaaaaagatactttaattgactt 421  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  31412569 cacttga-ttcattgcatttataaaataaatagatttagaaaaaactactttaattgactt 31412510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 702 - 882
Target Start/End: Complemental strand, 31413223 - 31413045
Alignment:
Q  702 tgttaatgctgggttaattgcatttactcttatttgacttgcacggttcaccacattggtttgaaattcaaattttccccttccatattccaatggtgca 801  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31413223 tgttaatgctgggttaattgcatttactcttatttgacttgcacggttcaccacattggtttgaaattcaaattttccccttccatattccaatggtgca 31413124  T
Q  802 ttaaatgtgtgtatcaaacccaatatgatatcttgctccacatgatcaaatcttttctcaaaacaaaacttctctttctct 882  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  31413123 ttaaatgtgtgtatcaaa-ccaatatgatatcttgctccacatgatcatatc-tttctcaaaacaaaacttctctttctct 31413045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 31079977 - 31079924
Alignment:
Q  288 ttaaaataatctacaactatttatgtttgcttattatcataaaaatcatttttt 341  Q
    |||||| |||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  31079977 ttaaaaaaatctaaagctatttatgtttgtttactatcataaaaatcatttttt 31079924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 4453783 - 4453812
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  4453783 acttattcctaatcctagttaacactccaa 4453812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 9208575 - 9208604
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  9208575 acttattcctaatcctagttaacactccaa 9208604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 24401442 - 24401342
Alignment:
Q  304 ctatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaa 403  Q
    |||||| |||||| ||| |||||||||||||||||||  |  | |||||||||||||||||||| ||| ||    ||| |||| |||||||||| |||||    
T  24401442 ctatttctgtttgtttactatcataaaaatcattttta-taagatttgaaactcttacacttgagttccttatgtttagaaaaaaaatagattttgaaaa 24401344  T
Q  404 ag 405  Q
    ||    
T  24401343 ag 24401342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 3e-75; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 418 - 597
Target Start/End: Complemental strand, 7608435 - 7608256
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgccaacaaacctcagcccttggatctaatctgttt 517  Q
    |||||||||||||||||||||| |||||||| || ||||| ||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||    
T  7608435 acttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatctgttt 7608336  T
Q  518 gcaattttttcctcctttttctcctgttttaggcgccaacaaccctcagcccttggatctaatctgtttgccattttttc 597  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7608335 gcaattttttcctcctttttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttc 7608256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 418 - 597
Target Start/End: Complemental strand, 31771423 - 31771244
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgccaacaaacctcagcccttggatctaatctgttt 517  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||    
T  31771423 acttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatctgttt 31771324  T
Q  518 gcaattttttcctcctttttctcctgttttaggcgccaacaaccctcagcccttggatctaatctgtttgccattttttc 597  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  31771323 gcaattttttcctcatttttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttc 31771244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 7608309 - 7608249
Alignment:
Q  475 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgcaattttttcctccttt 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7608309 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctccttt 7608249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 31771297 - 31771237
Alignment:
Q  475 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgcaattttttcctccttt 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  31771297 ttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctccttt 31771237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 2952918 - 2953010
Alignment:
Q  167 ctaatcctaattaacattgcaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg 258  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||||||  ||||||||||||||| |||||  | | |||| ||||||||||    
T  2952918 ctaatcctaattaacattgcaatgaccgaaacataccctaaacctaattatttaggcgccaaactatgataaatgttggatcattaacctttg 2953010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 410
Target Start/End: Complemental strand, 40901536 - 40901432
Alignment:
Q  304 ctatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaa 403  Q
    ||||||||||||||||| |||||||||||||||||||| |    |||||| |||||| |||||| |||||||   ||| |||| |||||||||| |||||    
T  40901536 ctatttatgtttgcttactatcataaaaatcatttttt-tagaatttgaagctcttatacttgagttcattgtgtttagaaaa-aaatagattttgaaaa 40901439  T
Q  404 agatact 410  Q
    || ||||    
T  40901438 agctact 40901432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 32440698 - 32440669
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  32440698 acttattcctaatcctagttaacactccaa 32440669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 702 - 835
Target Start/End: Original strand, 38014510 - 38014642
Alignment:
Q  702 tgttaatgctgggttaattgcatttactcttatttgacttgcacggttca-ccacattggtttgaaattcaaattttccccttccatattccaatggtgc 800  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||    
T  38014510 tgttaatgctgggttgattgcatttattgttatttgacttgcacggttcaaccacattggtttgaaattcaaattt-cctcttccatattccaatggcgc 38014608  T
Q  801 attaaatgtgtgtatcaaacccaatatgatatctt 835  Q
    ||||||||||||||||||| |||||||||||||||    
T  38014609 attaaatgtgtgtatcaaa-ccaatatgatatctt 38014642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 418 - 448
Target Start/End: Original strand, 26720242 - 26720272
Alignment:
Q  418 acttattcctaatcctagttaacactccaaa 448  Q
    |||||||||||||||||||||||||||||||    
T  26720242 acttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Original strand, 3649876 - 3649905
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  3649876 acttattcctaatcctagttaacactccaa 3649905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 32651319 - 32651290
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  32651319 acttattcctaatcctagttaacactccaa 32651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 287 - 416
Target Start/End: Original strand, 35858572 - 35858701
Alignment:
Q  287 gttaaaataatctacaactatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaa 386  Q
    ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||  |||||||||||||||||  |||||||||||||||| ||||||||    
T  35858572 gttaaaataatttacaactatttttgtttgcttactatcataaaaatcatttttaatttgttttgaaactcttgtacttgatttcattgcatttataaaa 35858671  T
Q  387 taaatagatttagaaaaagatactttaatt 416  Q
    |||||||||||| || ||  ||||||||||    
T  35858672 taaatagatttataagaatctactttaatt 35858701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 160 - 258
Target Start/End: Original strand, 35858064 - 35858161
Alignment:
Q  160 agtcaaactaatcctaattaacattgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg 258  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||| |||||||||||||||||||| |  ||||||||||||||    
T  35858064 agtcaaactaatcctaattaacattgcaattacctaatcaaaccctaaatctaattgtta-gcgccaaactaggataaccgttgaatctttaacctttg 35858161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 304 - 411
Target Start/End: Complemental strand, 34790499 - 34790394
Alignment:
Q  304 ctatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaa 403  Q
    |||||| |||||| ||| || ||||||||||||||||| |  | |||||| ||||||||||||| ||| ||| | ||| |||| |||||||||| |||||    
T  34790499 ctatttctgtttgtttactaacataaaaatcatttttt-taagatttgaagctcttacacttgagttccttgtatttagaaaa-aaatagattttgaaaa 34790402  T
Q  404 agatactt 411  Q
    || |||||    
T  34790401 agctactt 34790394  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 31941368 - 31941293
Alignment:
Q  322 tatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagattt 397  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | ||||||||| || ||||||||||||||||    
T  31941368 tatcattaaaatcatttttagtttgttttgaaactcttacacttaagttcattgcatttgtaaaataaatagattt 31941293  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 38612038 - 38611946
Alignment:
Q  167 ctaatcctaattaacattgcaatgacctaatcatactctaaacctaatt-gttaggcgccaaactaggataaccggttgatctttaacctttg 258  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||  ||||||| ||||||| |||||  | | |||||||||||||||    
T  38612038 ctaatcctaattaacattgcaatgacctaaccataccctaaacctaattatttaggcgtcaaactatgataaatgttggatctttaacctttg 38611946  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 19766019 - 19766068
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaat 467  Q
    ||||||| ||||||||||||||||||||||  || |||||||||||||||    
T  19766019 acttatttctaatcctagttaacactccaattaacactccaaaccctaat 19766068  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 424 - 509
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  424 tcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgcc-aacaaacctcagcccttggatcta 509  Q
    ||||| ||||||||||||||||||   | |||||||||||||||||   | ||||||||||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 46234012 - 46233983
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  46234012 acttattcctaatcctagttaacactccaa 46233983  T

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Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 418 - 509
Target Start/End: Original strand, 10200 - 10291
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgcc-aacaaacctcagcccttggatcta 509  Q
    ||||||||| ||||||||||||||||||||  || |||||||||||||||||   | ||||||||||| ||||| ||| ||||||||||||||    
T  10200 acttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 45463894 - 45463970
Alignment:
Q  182 attgcaatgacctaatcatactctaaacctaattgttaggcgccaaactaggataaccggttgatctttaacctttg 258  Q
    |||| ||||||||||||| || ||||| ||||||| |||||||||||||| |||||||| | ||||||||| |||||    
T  45463894 attgtaatgacctaatcaaaccctaaagctaattgctaggcgccaaactatgataaccgttggatctttaatctttg 45463970  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 42884502 - 42884426
Alignment:
Q  290 aaaataatctacaactatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttga 367  Q
    ||||||||||  | |||||| |||||||||| |||||||||||||||||||| |  | ||||||||||||||| ||||    
T  42884502 aaaataatctgaagctatttttgtttgcttactatcataaaaatcatttttt-taagatttgaaactcttacaattga 42884426  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 14755637 - 14755513
Alignment:
Q  288 ttaaaataatctacaactatttatgtttgcttattatcataaaaatcattttttgtt-tgttttgaaactcttacacttgatttcattgcaattataaaa 386  Q
    |||||| ||| || ||||||||||||||| ||| ||||| |||||||||||||| ||  | ||||||  |||||||||||| ||| ||    ||| ||||    
T  14755637 ttaaaaaaatataaaactatttatgtttgtttactatcacaaaaatcatttttttttaagatttgaagttcttacacttgagttccttatctttagaaaa 14755538  T
Q  387 taaatagatttagaaaaagatactt 411  Q
     |||||||||| ||||||| |||||    
T  14755537 aaaatagattttgaaaaagctactt 14755513  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 447
Target Start/End: Complemental strand, 44663732 - 44663703
Alignment:
Q  418 acttattcctaatcctagttaacactccaa 447  Q
    ||||||||||||||||||||||||||||||    
T  44663732 acttattcctaatcctagttaacactccaa 44663703  T

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Target: scaffold0057 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 411
Target Start/End: Original strand, 62624 - 62731
Alignment:
Q  304 ctatttatgtttgcttattatcataaaaatcattttttgtttgttttgaaactcttacacttgatttcattgcaattataaaataaatagatttagaaaa 403  Q
    |||||| |||||| |||  ||||||||||||||||| | | || ||| |||||||||||||||| ||| ||| | ||| |||| |||||||||| | |||    
T  62624 ctatttctgtttgtttaccatcataaaaatcattttgtttatgatttaaaactcttacacttgaattccttgtatttagaaaaaaaatagattttggaaa 62723  T
Q  404 agatactt 411  Q
    || |||||    
T  62724 agctactt 62731  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 37057 - 36966
Alignment:
Q  418 acttattcctaatcctagttaacactccaaaaaatactccaaaccctaattcccatattttaggcgcc-aacaaacctcagcccttggatcta 509  Q
    ||||||||||||||||| ||||||||||||  || ||| |||| ||||||||   | ||||||||||| ||||| ||| ||||||||||||||    
T  37057 acttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

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