View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591-Insertion-5 (Length: 616)
Name: NF4591-Insertion-5
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591-Insertion-5 |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 372 - 616
Target Start/End: Original strand, 8022184 - 8022428
Alignment:
| Q |
372 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
471 |
Q |
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| T |
8022184 |
tgttgagtatagcttagttctgattttgtacaagtacaaacttcctaaacttttctcaaccaacttctactatacacaccccaccaccaccaattttgaa |
8022283 |
T |
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| Q |
472 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttaacaaaccaacca |
571 |
Q |
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| T |
8022284 |
cctaattaattaagctcaggaatactttgtaaaacaggcttccatagcctatgatggacatcatggttgacatgatctctagcatttagcaaaccaacca |
8022383 |
T |
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| Q |
572 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtt |
616 |
Q |
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| T |
8022384 |
aaacatgttcagcagaagcatgttttgtgcttccaacaccctgtt |
8022428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 162 - 319
Target Start/End: Original strand, 8021974 - 8022131
Alignment:
| Q |
162 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
261 |
Q |
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| T |
8021974 |
gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc |
8022073 |
T |
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| Q |
262 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
319 |
Q |
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| T |
8022074 |
tatatacaatcataaaaatatagaaataacacattctcaacctctatatatatcttac |
8022131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 8021780 - 8021928
Alignment:
| Q |
8 |
gttccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagtta |
107 |
Q |
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| T |
8021780 |
gttccctgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagtta |
8021879 |
T |
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| Q |
108 |
tagatacaaagttttagcggtaattaatctaattaagagaacctatgaa |
156 |
Q |
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| T |
8021880 |
taaatacaaagttttagcgataattaatctaagtaagagaacctatgaa |
8021928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 20042 - 20094
Alignment:
| Q |
6 |
cagttccctgcttttctttatccttcaatattttatttattgctcggacatac |
58 |
Q |
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| T |
20042 |
cagttccctgattttctttatccttgaatattttatttattgctcgaacatac |
20094 |
T |
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