View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4591-Insertion-6 (Length: 480)
Name: NF4591-Insertion-6
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591-Insertion-6 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 135 - 480
Target Start/End: Complemental strand, 41486467 - 41486122
Alignment:
| Q |
135 |
taaaaatattagaaatgggagagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41486467 |
taaaaatattagaaatgggagagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgttt |
41486368 |
T |
|
| Q |
235 |
gatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaagacgtcagctgaatgatggaacc |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
41486367 |
gatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaagacgccagctgaatgatggaatc |
41486268 |
T |
|
| Q |
335 |
ttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataa |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41486267 |
ttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataa |
41486168 |
T |
|
| Q |
435 |
cattgtgtgtttacagatgttagcttgtttagagtgccgacaatga |
480 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41486167 |
cattgtgtgtttaccgatgttagcttgtttagagtgccgacaatga |
41486122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 41486970 - 41486840
Alignment:
| Q |
7 |
aaaatcctggcccttataggggtattgaattccttcttccttgaactctatttttaacatatatcgtaaacatatcaaatgtactcttatctcatatgtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41486970 |
aaaatcctggcccttataggggtattgaattccttcttccttgaactctatttttaacatatatcgtaaacatatcaaatgtactcttatctcatatgtt |
41486871 |
T |
|
| Q |
107 |
ggtaattctactaaaccaaagtagaatctaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41486870 |
ggtaattctactaaaccaaagtagaatctaa |
41486840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 324 - 480
Target Start/End: Complemental strand, 41483171 - 41483015
Alignment:
| Q |
324 |
atgatggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggtt |
423 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
41483171 |
atgatggaatcttctatgttatcgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcagtgaagtttgaaagaaaagggtt |
41483072 |
T |
|
| Q |
424 |
catgaagataacattgtgtgtttacagatgttagcttgtttagagtgccgacaatga |
480 |
Q |
| |
|
||| |||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
|
|
| T |
41483071 |
catatagataacattgtgtgtttaccgatgttggcttgtttagagtgctgacaatga |
41483015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 41483305 - 41483187
Alignment:
| Q |
155 |
gagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataag |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
41483305 |
gagtagcatgccatacccaatcttaataatatgcataatctcttatgtgaacatgcctgatgacttgtgcattcgcatttgatcagttataacttataag |
41483206 |
T |
|
| Q |
255 |
caaatgtgcaataggagaa |
273 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
41483205 |
caaacatgcaataggagaa |
41483187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 231 - 480
Target Start/End: Original strand, 45384520 - 45384776
Alignment:
| Q |
231 |
gtttgatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaagaaggaaaacagaaga---cgtcagctgaatg- |
326 |
Q |
| |
|
|||||||||||||||||| |||| |||| || |||||||| ||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |
|
|
| T |
45384520 |
gtttgatcagttataactaataaccaaa-gtacaataggataaccttt-ggtgactaatatgagaaagaaggaaaacagaataacacaccagttgaatgt |
45384617 |
T |
|
| Q |
327 |
--atggaaccttccatgttattgatttattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttc |
424 |
Q |
| |
|
||| || |||| ||| || || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45384618 |
tgatgaaatcttcagtgtcatcaatgtattcttttaactgaaacaagaaaatggaaacggtgatagataaactgcggtgaagttggaaagaaaagggtta |
45384717 |
T |
|
| Q |
425 |
at-gaagataacatt--gtgtgtttacagatgttagcttgtttagagtgccgacaatga |
480 |
Q |
| |
|
|| ||||||||| | | |||||||| ||||| | |||||||||||||| | |||||| |
|
|
| T |
45384718 |
atataagataacagtgcgggtgtttaccgatgtcaacttgtttagagtgctgtcaatga |
45384776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 433
Target Start/End: Original strand, 5671481 - 5671563
Alignment:
| Q |
351 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagata |
433 |
Q |
| |
|
||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
5671481 |
tattcttttaactgaaacatgaaaggaaaaacgatgatagataaactgcggtgaagttggaaagaaaagtgttaatgtagata |
5671563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 5680978 - 5681045
Alignment:
| Q |
351 |
tattcttttaactgaaacaagaaaagggaaactgtgatagataaactgcggtgaagttggaaagaaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
5680978 |
tattcttttaactgaaacaagaaaggaaaaacgataatagataaactgcggtgaagttggaaagaaaa |
5681045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 5685591 - 5685643
Alignment:
| Q |
384 |
gtgatagataaactgcggtgaagttggaaagaaaagggttcatgaagataaca |
436 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
5685591 |
gtgatagataaactgcggtgaatttggaaagaaaagggttaatgtagataaca |
5685643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 5795720 - 5795833
Alignment:
| Q |
200 |
tgtgaccatgtctgatgacttgtgcgttctcgtttgatcagttataacttataagcaaatgtgcaataggagaaccttttggtgactaatatgaaaaaga |
299 |
Q |
| |
|
||||| ||| || |||||||||| | || | | ||||||| ||||| |||||||||||| | ||||| | ||||||| |||||||||||| | ||||| |
|
|
| T |
5795720 |
tgtgaacatatcggatgacttgttcattgttggttgatcaattataccttataagcaaacatacaataatataaccttt-ggtgactaatataagaaaga |
5795818 |
T |
|
| Q |
300 |
aggaaaacagaagac |
314 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5795819 |
aggaaaacagaagac |
5795833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 5664411 - 5664449
Alignment:
| Q |
219 |
ttgtgcgttctcgtttgatcagttataacttataagcaa |
257 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5664411 |
ttgtgcattcttgtttgatcagttataacttataagcaa |
5664449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 5685435 - 5685473
Alignment:
| Q |
219 |
ttgtgcgttctcgtttgatcagttataacttataagcaa |
257 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
5685435 |
ttgtgcattcttgtttgatcagttataacttataagcaa |
5685473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 49562274 - 49562198
Alignment:
| Q |
72 |
gtaaacatatcaaatgtactcttatctcatatgttggtaattctactaaaccaaagtagaatctaaaaatattagaaatg |
151 |
Q |
| |
|
||||||||||||||||| ||| || |||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
49562274 |
gtaaacatatcaaatgt---cttttcccatatgttggcaattctaataaaccaaaatagaatcgaaaaatattagaaatg |
49562198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University