View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591-Insertion-7 (Length: 441)
Name: NF4591-Insertion-7
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 27896629 - 27896839
Alignment:
| Q |
19 |
acaaattggagggaatttcatatggtattcctcaatcatattgatcatagttacctggtctttaaggttagaaattttataaaaaagaaattgggctaag |
118 |
Q |
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| T |
27896629 |
acaaattggagggaatttcatatggtattcctcaatgatattgatcatagttagctggtctttaagattagaaattttatgaaaaagaaattgggcttag |
27896728 |
T |
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| Q |
119 |
gagtcaccatcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaa |
218 |
Q |
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| T |
27896729 |
gagtcaccatcatcataatgtaaacaacaatggttcaacaaaaatatacgcgttaaattgattacctgaacaaaagattgaattgaaagttatcgtgcaa |
27896828 |
T |
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| Q |
219 |
ctataactcat |
229 |
Q |
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| T |
27896829 |
ctataactcat |
27896839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 358 - 436
Target Start/End: Original strand, 27897729 - 27897807
Alignment:
| Q |
358 |
actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt |
436 |
Q |
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| T |
27897729 |
actatgtaattttagaccattatgttggactcaagcctagcttatactactataacccctttattaatatggttttctt |
27897807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 27897447 - 27897502
Alignment:
| Q |
307 |
ggacattacatgtgaatattgtttttatatgttttaatcaatttttgattcactat |
362 |
Q |
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| T |
27897447 |
ggacattacatgtgaatattgtttttatatgtctgaatcaatttttgattcactat |
27897502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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