View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591-Insertion-8 (Length: 235)
Name: NF4591-Insertion-8
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591-Insertion-8 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 28773183 - 28773409
Alignment:
| Q |
8 |
tttgtaacgtaattaagaatataattgtggatatgttgcttaaagaaagaaaacattatattttgcagtttgctaacaagtgatcatgattatgtgtttg |
107 |
Q |
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| T |
28773183 |
tttgtaacgtaattaagaatataattgtggatatgttgcttaa-gaaagaaagcattttattttgcagtttgctaacaagtgatcaagattatgtgtttg |
28773281 |
T |
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| Q |
108 |
atggtatatctggttcagctattaaaattgtaagaatgttatataaattttttaatgctgaatttgaatttatgattgcagtgtttcataaatctggaca |
207 |
Q |
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| T |
28773282 |
atggtatatctggtttagctattaaaattgtaagaatgttatataaattttttaatgttgaatttgaatttatgattgcagtgtttcataaatttggaca |
28773381 |
T |
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| Q |
208 |
cagggagaatattccgttatagtgggga |
235 |
Q |
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| T |
28773382 |
caggaagaatattccgttatagtgggga |
28773409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 28787121 - 28787292
Alignment:
| Q |
64 |
tatattttgcagtttgctaacaagtgatcatgattatgtgtttgatggtatatctggttcagctattaaaattgtaagaatgttatataaattttttaat |
163 |
Q |
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| T |
28787121 |
tatattttgcagtttgttaacaggtgatcatgattatgtgtttgatggtttatctggtttggctgttaaaattgtatgaatgttatataaattttttaat |
28787220 |
T |
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| Q |
164 |
gctgaatttgaatttatgattgcagtgtttcataaatctggacacagggagaatattccgttatagtgggga |
235 |
Q |
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| T |
28787221 |
gctgaatttgaatttatgattgcagtgtttcataaatctggacacaggaagaatattccgttatagtgggga |
28787292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 8828234 - 8828142
Alignment:
| Q |
91 |
tcatgattatgtgtttgatggtatatctggttcagctattaaaattgtaagaatgttatataaattttttaatgctgaatttgaatttatgat |
183 |
Q |
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| T |
8828234 |
tcatgattatgtgtttgatggtatatctggtttggctattaaaaatgtttgattcttacatattttttttaacaatgaatttgaaattatgat |
8828142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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