View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591_high_11 (Length: 247)
Name: NF4591_high_11
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 30001336 - 30001201
Alignment:
| Q |
1 |
tgttatcatattactgctacgaagttgtcaccgttatttaatagtgattaattttcatnnnnnnnttgttgaacacattagataaattattccatttcat |
100 |
Q |
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| T |
30001336 |
tgttatcatgttactgctacgaagttgtcaccgttatttaatagtgattaattttcataaaaaaattgttgaacacattagataaattattccatttc-- |
30001239 |
T |
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| Q |
101 |
tttagccaaaaatatctcgtacccaaaagtcaggatcaaac |
141 |
Q |
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| T |
30001238 |
---agccaaaaatatctcatacccagaagtcaggatcaaac |
30001201 |
T |
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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 30001098 - 30000995
Alignment:
| Q |
137 |
caaacaaacatgaagtttctgaggaagggaatatatccatgtgtgcctacacctcttaagtgaagctatctaaatagatttcaagtccacaccaattagt |
236 |
Q |
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||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30001098 |
caaacaaacatgaagttgc-gaggaaaggaatatatccatgtgtgcctacacctcttaagtgaagctatctaaatagatttcaagtccacaccaattatt |
30001000 |
T |
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| Q |
237 |
attat |
241 |
Q |
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||||| |
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| T |
30000999 |
attat |
30000995 |
T |
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