View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591_high_3 (Length: 565)
Name: NF4591_high_3
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 48455556 - 48456097
Alignment:
| Q |
17 |
atcaaccggatacatccgccgttcaccggagaggaaaaaattcacggcaaagtaaacagcggcggtgagaagcaaaggtggccggctggtggaggctgct |
116 |
Q |
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| T |
48455556 |
atcaaccggatacatccgccgttcaccggagaggaaaaaattaacggcaaagtaaacagcggcggtgagaagcaaaggtggccggctggtggaggttgct |
48455655 |
T |
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| Q |
117 |
tcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48455656 |
tcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcga |
48455755 |
T |
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| Q |
217 |
atccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaaagagtgtggaattgctagttgc |
316 |
Q |
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| T |
48455756 |
atccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagaggcaatgaaagcaaagagtgtggaattgctagttgc |
48455855 |
T |
|
| Q |
317 |
acctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgagggaggtggctacagttgttgaa---tcttct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48455856 |
acctccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgagggaggtggctacagttgttgaatcttcttct |
48455955 |
T |
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| Q |
414 |
tcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagtgatgtatctatggaagctggagggaaaagtgggt |
513 |
Q |
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| T |
48455956 |
tcttcttctagcttataagtgaatttgttgggtgaaacaaaagcgtagaaaatgtgagtgaaaagtgatgtatctatggaagatggagggaaaagtgggt |
48456055 |
T |
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| Q |
514 |
tttctatccagtatatgcctttcacacgtgtagttgatgatg |
555 |
Q |
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| T |
48456056 |
tttctatccagtatatgcctttcacacgtgtggttgatgatg |
48456097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 48461015 - 48461383
Alignment:
| Q |
20 |
aaccggatacatccgccgttcaccggagaggaaaaaattcacggcaaagtaaacagcggcggtgagaagcaaaggtggccggctggtggaggctgcttcg |
119 |
Q |
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| T |
48461015 |
aaccggatacatccgtggttcaccgtagatggaaaaattcacagcgaagtaaacagcggctgtgagaagcaacggtggccggccggtggtggcgccttca |
48461114 |
T |
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| Q |
120 |
tcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcccaatcgaagtcgattccatcgaatc |
219 |
Q |
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| T |
48461115 |
tcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgtttttaggaaactcccaatccaagtcaattccatcgaatc |
48461214 |
T |
|
| Q |
220 |
caaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaaagagtgtggaattgctagttgcacc |
319 |
Q |
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| T |
48461215 |
caaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacctgcacc |
48461314 |
T |
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| Q |
320 |
tccaatggaaaggagggtaggaatgggaggggttttagttttgaaagtgttggtgaaagtagtgaggga |
388 |
Q |
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||||||||||| ||| |||| ||||||| ||| |||||||| || ||||||||||| ||||||| |
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| T |
48461315 |
tccaatggaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgttgaggga |
48461383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 555
Target Start/End: Original strand, 48461444 - 48461541
Alignment:
| Q |
458 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagctggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtagttgatgatg |
555 |
Q |
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|||||| |||||||| || |||||||| |||| | || ||||||||||| ||| ||||||| |||||| || |||||||||||||| ||||||||| |
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| T |
48461444 |
gtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatg |
48461541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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