View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4591_high_4 (Length: 461)

Name: NF4591_high_4
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4591_high_4
NF4591_high_4
[»] chr2 (22 HSPs)
chr2 (152-456)||(30001393-30001697)
chr2 (27-260)||(45258012-45258243)
chr2 (19-150)||(12168964-12169094)
chr2 (19-240)||(3586355-3586574)
chr2 (27-224)||(36267498-36267693)
chr2 (19-140)||(45714987-45715106)
chr2 (27-215)||(27846424-27846610)
chr2 (19-144)||(10923141-10923264)
chr2 (34-143)||(24499796-24499903)
chr2 (22-150)||(15825149-15825275)
chr2 (27-144)||(12127639-12127754)
chr2 (19-123)||(20120339-20120441)
chr2 (54-224)||(19918962-19919130)
chr2 (19-150)||(29711010-29711137)
chr2 (81-166)||(23257834-23257918)
chr2 (54-151)||(18135898-18135993)
chr2 (81-144)||(18772300-18772363)
chr2 (58-132)||(18134349-18134423)
chr2 (81-150)||(15390555-15390624)
chr2 (19-61)||(12634838-12634880)
chr2 (54-107)||(18770341-18770392)
chr2 (33-81)||(30638569-30638617)
[»] chr6 (37 HSPs)
chr6 (30-222)||(3404760-3404950)
chr6 (30-224)||(19305467-19305659)
chr6 (34-224)||(18147313-18147501)
chr6 (19-213)||(34187291-34187478)
chr6 (54-154)||(15480307-15480405)
chr6 (26-144)||(20148316-20148430)
chr6 (26-144)||(22184398-22184512)
chr6 (51-224)||(11087526-11087697)
chr6 (36-224)||(14268440-14268626)
chr6 (19-156)||(34572958-34573093)
chr6 (19-151)||(689827-689956)
chr6 (19-150)||(34064187-34064316)
chr6 (27-224)||(22572045-22572239)
chr6 (19-150)||(30680984-30681113)
chr6 (29-135)||(4251029-4251133)
chr6 (26-144)||(19730567-19730683)
chr6 (27-141)||(31295514-31295626)
chr6 (27-143)||(9277278-9277391)
chr6 (28-144)||(9403173-9403287)
chr6 (54-150)||(16130995-16131089)
chr6 (54-149)||(17380124-17380217)
chr6 (59-150)||(19277046-19277135)
chr6 (19-150)||(27860918-27861047)
chr6 (27-150)||(33596861-33596982)
chr6 (54-156)||(9291984-9292083)
chr6 (54-144)||(10115661-10115749)
chr6 (84-143)||(12203615-12203674)
chr6 (31-84)||(25008424-25008477)
chr6 (55-130)||(18566685-18566758)
chr6 (27-74)||(16343579-16343626)
chr6 (27-144)||(22497274-22497389)
chr6 (61-150)||(31423807-31423894)
chr6 (272-340)||(10115529-10115597)
chr6 (19-150)||(12449553-12449682)
chr6 (101-144)||(27772541-27772584)
chr6 (26-128)||(10926886-10926986)
chr6 (99-144)||(22692162-22692207)
[»] chr4 (16 HSPs)
chr4 (27-260)||(47253277-47253508)
chr4 (27-142)||(12683785-12683898)
chr4 (27-150)||(19809701-19809822)
chr4 (51-149)||(19643726-19643822)
chr4 (19-216)||(29157094-29157289)
chr4 (19-224)||(2674470-2674669)
chr4 (30-144)||(15514537-15514649)
chr4 (41-215)||(10981880-10982050)
chr4 (54-150)||(15742123-15742217)
chr4 (27-150)||(5518540-5518661)
chr4 (27-144)||(14601991-14602106)
chr4 (27-84)||(16012505-16012562)
chr4 (101-149)||(50151775-50151823)
chr4 (27-82)||(13171079-13171134)
chr4 (81-136)||(19818745-19818800)
chr4 (54-109)||(14003075-14003128)
[»] chr1 (20 HSPs)
chr1 (19-336)||(16030387-16030702)
chr1 (32-144)||(12177391-12177501)
chr1 (27-150)||(26977740-26977861)
chr1 (19-144)||(5671762-5671885)
chr1 (27-144)||(16050394-16050509)
chr1 (27-144)||(34273087-34273202)
chr1 (19-142)||(33101485-33101606)
chr1 (82-215)||(2140853-2140986)
chr1 (54-149)||(52565607-52565700)
chr1 (28-130)||(22414776-22414876)
chr1 (19-151)||(23728789-23728919)
chr1 (19-144)||(18246135-18246257)
chr1 (54-144)||(23280238-23280324)
chr1 (27-140)||(25408096-25408207)
chr1 (99-166)||(8019018-8019085)
chr1 (313-366)||(1659544-1659597)
chr1 (81-150)||(12032223-12032291)
chr1 (33-144)||(1659765-1659874)
chr1 (19-210)||(5459619-5459807)
chr1 (41-149)||(21682561-21682667)
[»] chr5 (14 HSPs)
chr5 (22-338)||(27083021-27083333)
chr5 (30-144)||(22903096-22903208)
chr5 (19-321)||(20025275-20025576)
chr5 (19-215)||(26994511-26994705)
chr5 (19-144)||(8938904-8939026)
chr5 (19-149)||(22865753-22865881)
chr5 (37-150)||(24647298-24647409)
chr5 (83-141)||(34493567-34493625)
chr5 (19-83)||(16621200-16621264)
chr5 (27-150)||(25537405-25537526)
chr5 (27-224)||(32418382-32418577)
chr5 (112-259)||(26163700-26163848)
chr5 (54-144)||(25333762-25333850)
chr5 (112-154)||(26348057-26348099)
[»] scaffold0023 (2 HSPs)
scaffold0023 (27-144)||(95786-95901)
scaffold0023 (173-224)||(95706-95756)
[»] chr7 (20 HSPs)
chr7 (27-240)||(26762791-26763002)
chr7 (30-144)||(9135337-9135449)
chr7 (27-230)||(5863187-5863388)
chr7 (81-229)||(16203774-16203922)
chr7 (19-143)||(7486537-7486659)
chr7 (76-224)||(16204338-16204486)
chr7 (19-140)||(12644777-12644897)
chr7 (27-144)||(39879387-39879503)
chr7 (22-114)||(21161236-21161326)
chr7 (19-150)||(13292093-13292222)
chr7 (19-150)||(29373438-29373567)
chr7 (29-140)||(5928991-5929100)
chr7 (19-121)||(9867938-9868038)
chr7 (261-355)||(13159591-13159685)
chr7 (27-150)||(10287566-10287687)
chr7 (19-150)||(16987062-16987191)
chr7 (91-150)||(43172006-43172065)
chr7 (116-169)||(21161342-21161395)
chr7 (19-74)||(5925519-5925574)
chr7 (113-156)||(13159444-13159487)
[»] chr3 (19 HSPs)
chr3 (27-144)||(9801060-9801174)
chr3 (19-144)||(21342263-21342386)
chr3 (54-210)||(30606955-30607109)
chr3 (30-144)||(17143725-17143837)
chr3 (54-150)||(16704429-16704523)
chr3 (55-143)||(28715465-28715551)
chr3 (19-142)||(8122893-8123013)
chr3 (33-150)||(431286-431401)
chr3 (232-340)||(13084839-13084947)
chr3 (27-144)||(20622406-20622523)
chr3 (82-142)||(2311812-2311872)
chr3 (54-224)||(28723669-28723838)
chr3 (27-144)||(12516185-12516300)
chr3 (57-150)||(14860069-14860160)
chr3 (56-144)||(12731537-12731623)
chr3 (54-136)||(17485608-17485688)
chr3 (54-107)||(1770852-1770903)
chr3 (30-72)||(6109699-6109741)
chr3 (54-193)||(25495965-25496103)
[»] chr8 (22 HSPs)
chr8 (31-207)||(13754762-13754936)
chr8 (34-224)||(6927990-6928174)
chr8 (27-149)||(30477641-30477761)
chr8 (19-144)||(18322935-18323058)
chr8 (54-150)||(17698255-17698349)
chr8 (89-224)||(23497060-23497194)
chr8 (19-143)||(17927681-17927803)
chr8 (19-215)||(13764981-13765175)
chr8 (54-150)||(26916868-26916962)
chr8 (27-224)||(5859815-5860010)
chr8 (19-140)||(21416730-21416849)
chr8 (19-127)||(24507449-24507555)
chr8 (40-121)||(24070865-24070945)
chr8 (27-150)||(3459454-3459575)
chr8 (19-84)||(23269238-23269303)
chr8 (19-85)||(1909741-1909807)
chr8 (19-144)||(15058027-15058150)
chr8 (27-144)||(24576559-24576674)
chr8 (101-205)||(23269306-23269411)
chr8 (87-152)||(17319600-17319665)
chr8 (99-143)||(23963432-23963476)
chr8 (106-150)||(26999202-26999246)
[»] scaffold0002 (2 HSPs)
scaffold0002 (51-150)||(120981-121078)
scaffold0002 (30-154)||(379719-379841)
[»] scaffold0140 (1 HSPs)
scaffold0140 (19-175)||(6290-6445)
[»] scaffold0054 (1 HSPs)
scaffold0054 (26-144)||(68778-68892)
[»] scaffold0360 (1 HSPs)
scaffold0360 (54-144)||(13949-14037)
[»] scaffold0291 (2 HSPs)
scaffold0291 (55-144)||(15406-15493)
scaffold0291 (19-126)||(8571-8675)
[»] scaffold0205 (2 HSPs)
scaffold0205 (19-144)||(10891-11014)
scaffold0205 (54-142)||(22913-22999)
[»] scaffold0103 (1 HSPs)
scaffold0103 (26-149)||(40795-40916)
[»] scaffold0505 (1 HSPs)
scaffold0505 (19-144)||(7877-8000)
[»] scaffold0294 (1 HSPs)
scaffold0294 (54-142)||(220-307)
[»] scaffold0092 (1 HSPs)
scaffold0092 (31-141)||(21597-21705)
[»] scaffold0074 (1 HSPs)
scaffold0074 (27-128)||(35253-35353)
[»] scaffold0005 (1 HSPs)
scaffold0005 (27-144)||(215272-215387)
[»] scaffold0013 (1 HSPs)
scaffold0013 (19-144)||(4400-4523)
[»] scaffold0380 (1 HSPs)
scaffold0380 (54-151)||(6829-6924)
[»] scaffold0263 (1 HSPs)
scaffold0263 (54-150)||(20467-20561)
[»] scaffold0057 (1 HSPs)
scaffold0057 (85-130)||(73792-73837)
[»] scaffold0012 (1 HSPs)
scaffold0012 (100-144)||(149217-149261)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 152 - 456
Target Start/End: Complemental strand, 30001697 - 30001393
Alignment:
Q  152 tgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatccgcgtgcagaggcgtgcctggaagcgat 251  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||     
T  30001697 tgtgaagataactgtttctaggttttgcggcgtataattagggaacggttagaggacacatgtagagtgatctgcgtgcagaggcatgcctggaagcgac 30001598  T
Q  252 gtggtgcacgatgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacgtgtcaatatgggattggtcttcttgccggttcag 351  Q
    | |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  30001597 gcggtgcacgatgttggcgtgttccttcgagcatcgagccttaaggcagtgtatgtatagtccacatgtcaatatgggattggtcttcttgccgattcag 30001498  T
Q  352 aacaataattattttaaaatttgggataacttggattttcgagtgccatcgagaatgcttatttttgaatttctcatttgtcttcgaagatgttttcttt 451  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30001497 aacaatagttattttaaaatttgggataacttggattttcgagtgccatcgagaatgcttatttttgaatttctcacttgtcttcgaagatgttttcttt 30001398  T
Q  452 tctct 456  Q
    |||||    
T  30001397 tctct 30001393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 45258243 - 45258012
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||||||||||||||||| |||  || |||| ||||||| |||| ||||||| |||||   |||||||||| ||||||||||| ||||||||||||||||    
T  45258243 tgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtc--gaaagtgttgtgaaaagtgaatcataccttgagggtgaa 45258146  T
Q  127 gcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatccgc 226  Q
    |||||||||||||||||| ||  |  |||| ||||||||| || | |||||||||||| | |||||||| |||||||||||||| || || ||||||| |    
T  45258145 gcaaagtcacccttatataggtcctcgtgacgataaccgtctccgagttttgcggcgtgtgattagggagcggttagaggacacatgcagggtgatcctc 45258046  T
Q  227 gtgcagaggcgtgcctggaagcgatgtggtgcac 260  Q
    |  | ||||||||| |||| | |||| |||||||    
T  45258045 gcacggaggcgtgcttggatgtgatgcggtgcac 45258012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 12168964 - 12169094
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacactt-aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattatacctt 117  Q
    ||||||| ||||||||| |||||||| |||| ||| ||||||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||    
T  12168964 aaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgt--gtagaaagtgttgtgaaaagtgaattatacctt 12169061  T
Q  118 gagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||| | |||||||| || |||||    
T  12169062 gagggtgaagcaatgccacccttaaataggcgc 12169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3586355 - 3586574
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||| |||||||||  ||| | || || ||||||||||||||||||||||| |||| ||  ||||||||||| ||||||||||| ||||||||    
T  3586355 aaggtgcatgccggcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagt--agaaagtgttgtgaaaagtgaatcataccttg 3586452  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtaga 217  Q
    ||||||||||||  |||||||||||| |||||  | ||   ||||||| |||| |||| |||||||| | | ||||| ||||||||||||||| |||||     
T  3586453 agggtgaagcaagttcacccttatataggcgcgcgttggtcataaccgcttcttggttatgcggcgtgtgaataggg-acggttagaggacacatgtagg 3586551  T
Q  218 gtgatccgcgtgcagaggcgtgc 240  Q
     |||||| ||||| |||| ||||    
T  3586552 atgatcctcgtgcggaggtgtgc 3586574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 36267498 - 36267693
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| ||| ||||||||| |||| || |||||||||||| ||||||||||||||||  |||||||| |||| ||||||||||| ||||||||||||||||    
T  36267498 tgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgt--gtagaaagggttgtgaaaagtgaatcataccttgagggtgaa 36267595  T
Q  127 gcaaagtcacccttatattggcgcatgtgaa-gataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||  |||||||||||| | ||   || || ||||||||| ||  | || |||||||||| ||| ||| ||||||||| ||||||| ||| |||||||    
T  36267596 gcaagttcacccttatatagacgtgcgtcaaggataaccgtctcaagattatgcggcgtatgatttggg-acggttagaagacacgtatagggtgatcc 36267693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 45714987 - 45715106
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||||||||||| |||| |||| || |||||||||||| ||||||||||||  ||||||| ||||||| | ||||| ||||| ||||||||    
T  45714987 aaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaaga--gtgtgtaaaaagtgtggtgaaaattgaatcataccttg 45715084  T
Q  119 agggtgaagcaaagtcaccctt 140  Q
    | |||||||| |||||||||||    
T  45715085 aaggtgaagctaagtcaccctt 45715106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 27846610 - 27846424
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| ||||  | ||||||||||||||||||||||| ||| |||  ||||||||||| | |||||||||| |||||||||||||||    
T  27846610 tgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgt--agaaagtgttgtgtaaagtgaattgtaccttgagggtgaa 27846513  T
Q  127 gcaaagtcacccttatattg--gcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgta 215  Q
    |  ||||||||| || || |   ||| || ||| ||||| || |||||||||||| | || | ||||||||||| ||||||||||||||||    
T  27846512 gttaagtcacccatacatagacacgcctgagaa-ataactgtctctgggttttgc-gtgtgtgattagggaacgattagaggacacgtgta 27846424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 10923264 - 10923141
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||||||| |||||||||| |||| | ||||| |||||||| |||||||| | |||||||||||  |||||||| || |||||||||| | | |||||    
T  10923264 aaggtgtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgt--agaaagtgctgtgaaaagtgaagtgtgccttg 10923167  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    ||||||||||||  ||||||||||||    
T  10923166 agggtgaagcaagttcacccttatat 10923141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 143
Target Start/End: Original strand, 24499796 - 24499903
Alignment:
Q  34 acgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagt 133  Q
    |||||| |||| |||| || ||||||||||||||| |||||||||||||  ||||||| ||||| ||||||||||| ||||||| ||||||||||||  |    
T  24499796 acgttagcactccaacgctcaagtcagtaatggaaatgagaaagagtgt--gtagaaaatgttgtgaaaagtgaatcataccttaagggtgaagcaagtt 24499893  T
Q  134 cacccttata 143  Q
    ||||||||||    
T  24499894 cacccttata 24499903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 15825149 - 15825275
Alignment:
Q  22 gtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagg 121  Q
    |||| ||||||||||||| |||||  || || ||||| |||||||||||||||||||  ||||||||||||||||| ||||||| |  | ||||||||||    
T  15825149 gtgtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaaga--gtgtgtagaaagtgttgtgaaaagtcatgtgtaccttgagg 15825246  T
Q  122 gtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||  |||||||| ||| |||||    
T  15825247 gtgaagcaagttcacccttgtataggcgc 15825275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 12127754 - 12127639
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| |||| || |||||||||||| |||| |||| |  |||||||||||||||||| ||||||||||| |||| |||  ||||||    
T  12127754 tgcaggcacgttagcactccaacgctcaagtcagtaatgaaactaagaacg--tgtgtgtagaaagtgttgtgaaaagtgaatcatactttggtggtgaa 12127657  T
Q  127 gcaaagtcacccttatat 144  Q
    |||| |||| ||||||||    
T  12127656 gcaatgtcaaccttatat 12127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 20120339 - 20120441
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||||||||||| |||| | || || |||||||||||| |||||||||||||||||||  ||||||| || || |||||||| ||||||||    
T  20120339 aaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtg--gaaagtggtgtgataagtgaatcataccttg 20120436  T
Q  119 agggt 123  Q
    |||||    
T  20120437 agggt 20120441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 19919130 - 19918962
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgca-t 152  Q
    |||||| |||||||| ||||||||||| |||  ||||||||||| ||||||||||| ||||||||||| ||||||||  |||| ||||||| |||||| |    
T  19919130 aagtcaataatggaaatgagaaagagtatgt--agaaagtgttgtgaaaagtgaatcataccttgaggatgaagcaatatcactcttatataggcgcact 19919033  T
Q  153 gtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||  |||| ||  ||| | ||||||||||| | ||||  |||| ||||||||| |||| ||| |||||||    
T  19919032 gtgagaataatcgcctctcgattttgcggcgtgtgatta-agaactgttagaggatacgtttagcgtgatcc 19918962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29711010 - 29711137
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||||||||| |||||||| |||| |||| || |||||| |||||||| ||| | |||||||  |    |||||||| |||||||||  | |||||||    
T  29711010 aaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaattgaaagagagtgtacg----aagtgttgtgaaaagtgatgtgtaccttg 29711105  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||  |||||||||||| |||||    
T  29711106 agggtgaagcaagttcacccttatataggcgc 29711137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 23257834 - 23257918
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgt 166  Q
    ||||||||||||||| | |||||||||||| ||||||||||||||| ||| ||||||||||||| ||||  |||||  ||||||||    
T  23257834 gtgtgtagaaagtgtgg-gaaaagtgaattgtaccttgagggtgaatcaaggtcacccttatataggcgtgtgtgagaataaccgt 23257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 18135898 - 18135993
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgca 151  Q
    |||| ||||||||||||||||||||  |||||||  ||||||||  ||||||||  ||||||| || ||||||||||  |||||||||||| ||||||    
T  18135898 aagttagtaatggaactgagaaaga--gtgtgtaagaagtgttgtcaaaagtgatgtatacctagaaggtgaagcaagttcacccttatataggcgca 18135993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 18772300 - 18772363
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    ||||||||||||||||| |||||||||  |  ||||||||||||||||||  ||||||||||||    
T  18772300 gtgtgtagaaagtgttgtgaaaagtgacgtgcaccttgagggtgaagcaagttcacccttatat 18772363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 18134349 - 18134423
Alignment:
Q  58 cagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaag 132  Q
    ||||||||||| ||||||||||| |||  | ||||| ||| ||||| |||||| |||||||||||||||| ||||    
T  18134349 cagtaatggaattgagaaagagtatgtagaaaaagtattgtgaaaaatgaattgtaccttgagggtgaagtaaag 18134423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 15390624 - 15390555
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||  |||||||| |||||||||  | |||||||||||||||||||  |||||||||||| |||||    
T  15390624 gtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 15390555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 12634838 - 12634880
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagt 61  Q
    |||||| ||||||||||||||||||| |||| |||||||||||    
T  12634838 aaggtgcatgcaggcacgttaacactccaactcttaagtcagt 12634880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 18770341 - 18770392
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtga 107  Q
    |||||||||||| || |||||||||  ||||||||||||||||| |||||||||    
T  18770341 aagtcagtaatgaaattgagaaaga--gtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 30638569 - 30638617
Alignment:
Q  33 cacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtg 81  Q
    |||||||||||||| || || | ||||||||||||||| ||||||||||    
T  30638569 cacgttaacacttcgacgctcatgtcagtaatggaactaagaaagagtg 30638617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 3404950 - 3404760
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||||||||||||||      
T  3404950 aggcacattaacactctaacacttaagtcagtaatggaactgagaaagagtgtgt--agaaagtgttgtgaaaaatgaatcataccttgagggtgaagtt 3404853  T
Q  130 aagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgat 222  Q
    || | |||||||||| ||||| |||||| |||||||| |||||||||||| |||| | |||| |||  |||||||||||||||||||||||||    
T  3404852 aaattacccttatataggcgcgtgtgaaaataaccgtctctgggttttgcagcgtgtgattaaggagtggttagaggacacgtgtagagtgat 3404760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 19305467 - 19305659
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||||||| ||||| ||| || |||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||    
T  19305467 aggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgt--gtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagca 19305564  T
Q  130 aagtcacccttatattggcgcatgtgaa-gataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    | |||||||||| || |||||  || || ||||| |  ||  | ||||||||| || | ||||||||| | ||||||||||||||||| |||||||    
T  19305565 aggtcacccttaaataggcgcgagttaaggataaactctttcgagttttgcggggtgtgattagggaa-gattagaggacacgtgtagggtgatcc 19305659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 18147313 - 18147501
Alignment:
Q  34 acgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagt 133  Q
    ||||||||||| |||| || |||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||| | ||||||| |||||||||||| ||    
T  18147313 acgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgt--gtagaaagtgttgtgaaaagtgactcatacctttagggtgaagcaatgt 18147410  T
Q  134 cacccttatattg--gcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||||||||| |  |||||| ||    ||||||  |||||||||||| |||| | ||||||| |||||||||||||| |||||  |||||||    
T  18147411 cacccttatataggtgcgcat-tgggattaaccgcctctgggttttgcagcgtgtgattaggg-acggttagaggacatgtgtaaggtgatcc 18147501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 34187291 - 34187478
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||| ||||||| |||  ||||||| |||||||||||||||||||||||||  ||||||| ||||||| | | |||||||||| |||||||    
T  34187291 aaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaaga--gtgtgtaaaaagtgtggtg-aaagtgaattgtaccttg 34187387  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtg 213  Q
    ||||||||||    |||||||||||| |||  | ||||  |||||||| || ||| | ||| |||| | |||||||| |  ||||||||||||||    
T  34187388 agggtgaagc----tcacccttatataggcatacgtgagaataaccgtctccgggatatgcagcgtgtgattagggatcaattagaggacacgtg 34187478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 15480405 - 15480307
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatg 153  Q
    |||||| ||||| |||||||||| |||||||  ||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||| || |||||    
T  15480405 aagtcaataatgaaactgagaaaaagtgtgt--agaaagtgttgtgaaaagtgaatcataccttgagagtgaagctaagtcacccttatataggtgcatg 15480308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 144
Target Start/End: Original strand, 20148316 - 20148430
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    |||||| ||||||| |||| || | || |||| |||||||||| |||||||||||||    ||||||||||| ||||||||||| ||||||||| |||||    
T  20148316 atgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgt----agaaagtgttgtgaaaagtgaatcataccttgatggtga 20148411  T
Q  126 agcaaagtcacccttatat 144  Q
    ||||| |||||||||||||    
T  20148412 agcaaggtcacccttatat 20148430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 22184512 - 22184398
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    |||||| ||||||| |||| || | || |||| |||||||||| |||||||||||||    ||||||||||| ||||||||||| ||||||||| |||||    
T  22184512 atgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgt----agaaagtgttgtgaaaagtgaatcataccttgatggtga 22184417  T
Q  126 agcaaagtcacccttatat 144  Q
    ||||| |||||||||||||    
T  22184416 agcaaggtcacccttatat 22184398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 11087526 - 11087697
Alignment:
Q  51 cttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||| |||||||||||||| |||  |||  |||||| ||||||||||| ||||||||||| |||| |||  |||||||||||| || ||    
T  11087526 cttaagtcagtaatgtaactgagaaagagtatgt--agattgtgttgtgaaaagtgaatcataccttgaggatgaaacaagttcacccttatataggtgc 11087623  T
Q  151 atg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
      | |||  ||||| || || || || |||||||| |||||| || ||||||||||||||||||||| |||||||    
T  11087624 gcgttgagcataactgtctccggattatgcggcgtgtaattaagg-acggttagaggacacgtgtagggtgatcc 11087697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 14268440 - 14268626
Alignment:
Q  36 gttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttga-gggtgaagcaaagtc 134  Q
    |||| |||| |||| || ||||||||||||||||| ||| | |||||  ||||||||||||  ||||||||||| ||| | ||| ||||||||| |||||    
T  14268440 gttagcactccaacgctgaagtcagtaatggaactaagacatagtgt--gtagaaagtgttttgaaaagtgaatcatatcgtgaggggtgaagctaagtc 14268537  T
Q  135 acccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    |||||||||| ||| |     |||||||||||||| ||| |||  ||||| | |||||||| |||||||||||||||||||  |||||||    
T  14268538 acccttatataggcacgcacaaagataaccgtttccggg-tttatggcgtgtgattagggagcggttagaggacacgtgtaaggtgatcc 14268626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 34573093 - 34572958
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||| ||| |||| ||| |||| || |||| |||||| ||||| ||||| |||||||  ||||||||| | ||||||||||| |||| |||    
T  34573093 aaggtgtctgcagacacattaatactccaacgctcaagttagtaatagaactaagaaaaagtgtgt--agaaagtgtggtgaaaagtgaatcatacattg 34572996  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtga 156  Q
    |||||||||  ||||||||||||||| ||||| |||||    
T  34572995 agggtgaagttaagtcacccttatataggcgcgtgtga 34572958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 689956 - 689827
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||||| || ||| |||| |||  || ||||||||||||||||||||||  |||||||||| ||||||||| |||||||||||  |||||||    
T  689956 aaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaa--agtgtgtgtataaagtgttgtgaaaagtgaatcgtaccttg 689859  T
Q  119 agggtgaagcaaagtcacccttatattggcgca 151  Q
    ||| || | ||| ||||||||||||| ||||||    
T  689858 aggctg-atcaaggtcacccttatataggcgca 689827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 34064187 - 34064316
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||||||||||||||||   ||  | |||||||||||| |||| |||||||||||||  |  |||||||| |||||||||  | |||||||    
T  34064187 aaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttg 34064284  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||  |||||||||||| |||||    
T  34064285 agggtgaagcaagttcacccttatataggcgc 34064316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 22572045 - 22572239
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| ||||   || || | ||||||||||||| ||| |||||||||||  |||| |||||| | ||||||||| ||| ||||||||||||    
T  22572045 tgcaggcacgttagcactatgacgctcatgtcagtaatggaattga-aaagagtgtgt--agaaggtgttgtgtaaagtgaatcatatcttgagggtgaa 22572141  T
Q  127 gcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||  ||||| ||||||||||||  | |||  |||||||| ||  |||| ||||  |||| ||||||| ||||||||||||||||||| | |||||||    
T  22572142 gcaagttcacctttatattggcgcgcgttgagcataaccgtctccaggttatgcgaagtatgattaggg-acggttagaggacacgtgtggggtgatcc 22572239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 30680984 - 30681113
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||  ||||||| |||| |||| || |||||||||||| |||||| |||||| ||||  |||| || ||| ||||||||||| ||||||||    
T  30680984 aaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgt--agaatgtattgtgaaaagtgaatcataccttg 30681081  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    ||| |||||||| |||||| ||| || |||||    
T  30681082 aggatgaagcaatgtcacctttagataggcgc 30681113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 4251133 - 4251029
Alignment:
Q  29 caggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagc 128  Q
    |||||||| ||||||| ||||  | |||||||||||| || ||||||||||||||   ||| ||||||| ||||||| ||| ||| ||||||||||||||    
T  4251133 caggcacgataacactccaacgttcaagtcagtaatgaaaatgagaaagagtgtgg--agagagtgttgtgaaaagtaaatcatatcttgagggtgaagc 4251036  T
Q  129 aaagtca 135  Q
    |||||||    
T  4251035 aaagtca 4251029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 19730683 - 19730567
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    ||||||||| |||| |||| |||| || |||||| ||||||||||||||||||||||||  |  |||||| | | |||||||  | ||||||||||||||    
T  19730683 atgcaggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgt--aagaagtgtcgtgtaaagtgatgtgtaccttgagggtga 19730586  T
Q  126 agcaaagtcacccttatat 144  Q
    |||||  ||||||||||||    
T  19730585 agcaagttcacccttatat 19730567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 31295626 - 31295514
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||||||| |||| |||||| || || |||||||||||| ||||||||||||||  |||||  |||||||| |||||||||  | ||||| |||||||||    
T  31295626 tgcaggcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagt--gtgtatgaagtgttgtgaaaagtgatatgtacctcgagggtgaa 31295529  T
Q  127 gcaaagtcaccctta 141  Q
    ||||  |||||||||    
T  31295528 gcaagttcaccctta 31295514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 9277391 - 9277278
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| ||||  ||| || ||||||||| ||||||||||||||||| |||  | ||||||| | |||| |||||| ||||||||||||||||    
T  9277391 tgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgt--aaaaagtgtggagaaa-gtgaatcataccttgagggtgaa 9277295  T
Q  127 gcaaagtcacccttata 143  Q
    || || |||||||||||    
T  9277294 gctaactcacccttata 9277278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 9403173 - 9403287
Alignment:
Q  28 gcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaag 127  Q
    ||||||||||||  ||| | || || |||||| ||||||||||||||||||  |||||||  |||||||| | |||||||  | ||||||||||||||||    
T  9403173 gcaggcacgttagaactccgacgctcaagtcaataatggaactgagaaaga--gtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaag 9403270  T
Q  128 caaagtcacccttatat 144  Q
    |||  ||||||||||||    
T  9403271 caagttcacccttatat 9403287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 16130995 - 16131089
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||||||| |||||||||    ||||||||||| |||| |||||| |||||||||||||||| |||  | |||||||||| |||||    
T  16130995 aagtcagtaatggaactgataaagagtgtac--agaaagtgttgtgaaacgtgaatcataccttgagggtgaaacaagtttacccttatataggcgc 16131089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 17380124 - 17380217
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcg 149  Q
    ||||||||||| ||||||||||||||||||  ||  |||||||| |||||||||||  |||||| ||| ||| |||| ||||||||||||| ||||    
T  17380124 aagtcagtaatagaactgagaaagagtgtgaata--aagtgttgtgaaaagtgaatcttaccttcaggttgacgcaaggtcacccttatataggcg 17380217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 19277135 - 19277046
Alignment:
Q  59 agtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||| |||||||||||||||  |  |||||||| |||||||||  | |||||||||||||||||||  |||||||||||| |||||    
T  19277135 agtaatggaaatgagaaagagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 19277046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 27861047 - 27860918
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||||||| ||||  |||  |||||| |||||||||||||||||||  ||||| | |||||  |||||||| |||||||||  | ||| |||    
T  27861047 aaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactga--aagagagagtgtaagaagtgttgtgaaaagtgatgtgtactttg 27860950  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||  |||||||| ||| |||||    
T  27860949 agggtgaagcaagttcacccttttataggcgc 27860918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 33596861 - 33596982
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||| ||||||||  ||| || || ||||||||| |||| ||||| |||||  ||||||||||||| |||||  |||| ||||||||||| ||||    
T  33596861 tgcaggcacattaacactctaacgctcaactcagtaatgaaactaagaaaaagtgt--gtagaaagtgttgtgaaaatggaatcataccttgaggatgaa 33596958  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
    ||||  |||| ||||||| |||||    
T  33596959 gcaagttcactcttatataggcgc 33596982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 9292083 - 9291984
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatg 153  Q
    ||||||||| ||||||||||||| ||| |||  | ||||||| | ||||||||||| |||||||||||||||||| || ||||| |||||| |||||| |    
T  9292083 aagtcagtattggaactgagaaatagtatgt--aaaaagtgtgg-gaaaagtgaatcataccttgagggtgaagctaactcacctttatataggcgcacg 9291987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 10115749 - 10115661
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||||| ||||||||||||| | ||  | ||||| ||| ||||||||||| |||||| ||||||||||| |||||| ||||||||    
T  10115749 aagtcagtaatgaaactgagaaagagcgagt--aaaaagttttgtgaaaagtgaatcatacctcgagggtgaagctaagtcagccttatat 10115661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 12203674 - 12203615
Alignment:
Q  84 tgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttata 143  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||  ||||||||||||||    
T  12203674 tgtagaaagtgttgtgaaaagtgaatcatactttgagggtgaagttaagtcacccttata 12203615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 25008477 - 25008424
Alignment:
Q  31 ggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgt 84  Q
    |||||||||||||| |||| || ||||||||||||||| |||||||||||||||    
T  25008477 ggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgtgt 25008424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 18566685 - 18566758
Alignment:
Q  55 agtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaa 130  Q
    ||||||||||||||||||||||||   ||||||||||| ||||  ||||||||| | |||||||||||||| ||||    
T  18566685 agtcagtaatggaactgagaaaga--ttgtgtagaaagcgttgtaaaaagtgaagtctaccttgagggtgaggcaa 18566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 16343579 - 16343626
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgaga 74  Q
    ||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  16343579 tgcaggcacgttagcactccaacactcaagtcagtaatggaactgaga 16343626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 22497389 - 22497274
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| |||| | || || ||||||||||||||||  |||||||| | || || ||||||||| ||||||||   | |||||||||||||||    
T  22497389 tgcagacacgttagcactccgacgctcaagtcagtaatggaac--agaaagagagagtataaaaagtgttgtgaaaagtgttgtgtaccttgagggtgaa 22497292  T
Q  127 gcaaagtcacccttatat 144  Q
    ||||  |||||| |||||    
T  22497291 gcaagttcacccatatat 22497274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 31423894 - 31423807
Alignment:
Q  61 taatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||| |||||||||||||| |||  ||||||||||| || |||||||| ||  ||||||||||||||||   ||||||||||| |||||    
T  31423894 taatgaaactgagaaagagtatgt--agaaagtgttgtgagaagtgaatcatgtcttgagggtgaagcaagtgcacccttatataggcgc 31423807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 10115597 - 10115529
Alignment:
Q  272 gttccttcgagcgttgagccttaaggcagtgtatgtatagtccacgtgtcaatatgggattggtcttct 340  Q
    |||||||||  |||||||||||||| | | ||||| ||||||||| |||||| || |||||||||||||    
T  10115597 gttccttcggacgttgagccttaagacggcgtatgaatagtccacatgtcaacataggattggtcttct 10115529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 12449682 - 12449553
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| || |||||||||| ||||   || || |||||||||||||| |||| |||||||  |||||  |||||||| | |||||||  | |||||||    
T  12449682 aaggtgtctgtaggcacgttagcactctgacgctcaagtcagtaatggagctgaaaaagagt--gtgtaagaagtgttgtggaaagtgatgtgtaccttg 12449585  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||| |||  | |||||||||| |||||    
T  12449584 agggtgaatcaagtttacccttatataggcgc 12449553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 27772584 - 27772541
Alignment:
Q  101 aaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    ||||||||| ||||||||| |||||||||| |||||||||||||    
T  27772584 aaagtgaatcataccttgaaggtgaagcaaggtcacccttatat 27772541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 10926986 - 10926886
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    |||||| ||||||| ||| ||||| |  || |||||| ||||||||||||| || ||| ||| ||||||| | ||||||||||||||| |||| ||||||    
T  10926986 atgcagacacgttagcacctcaacgcccaattcagtattggaactgagaaa-agagtgcgtaaaaagtgtgg-gaaaagtgaattatatcttgggggtga 10926889  T
Q  126 agc 128  Q
    |||    
T  10926888 agc 10926886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 22692162 - 22692207
Alignment:
Q  99 gaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    ||||||||||| ||| |||||||||||||| |||||||| ||||||    
T  22692162 gaaaagtgaatcataacttgagggtgaagctaagtcacctttatat 22692207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 47253277 - 47253508
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||||||| |||| |||| |||| || |||||||||||||||||||||||||||||||  | ||||||||| ||||||||||| ||||||||||||||||    
T  47253277 tgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgt--aaaaagtgttgtgaaaagtgaatcataccttgagggtgaa 47253374  T
Q  127 gcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatccgc 226  Q
    || ||||||||||||||| |||||   |||  ||||| || || ||||||||||| || | ||||| || |  ||||||||||| ||||||||||||| |    
T  47253375 gctaagtcacccttatataggcgcgcatgataataactgtctccgggttttgcggtgtgtgattagagagcaattagaggacacatgtagagtgatcctc 47253474  T
Q  227 gtgcagaggcgtgcctggaagcgatgtggtgcac 260  Q
    | || ||||||| | |||| | ||||||||||||    
T  47253475 gcgcggaggcgtacttggatgtgatgtggtgcac 47253508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 12683785 - 12683898
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| |||| || |||| ||||||| ||||||||||||||||  ||||||||||||| ||||||||||| ||||||| ||||||||    
T  12683785 tgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgt--gtagaaagtgttgtgaaaagtgaatcataccttaagggtgaa 12683882  T
Q  127 gcaaagtcacccttat 142  Q
    ||||  ||||||||||    
T  12683883 gcaagttcacccttat 12683898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 19809701 - 19809822
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| || |||| |||| |||| || |||||||||||| |||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  19809701 tgcagacatgttagcactccaacgctcaagtcagtaatgaaactaagaaagagtgt--gtagaaagtgttgtgaaaagtgaattataccttgagggtgaa 19809798  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
     | |||||||||||| || |||||    
T  19809799 actaagtcacccttacataggcgc 19809822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 19643726 - 19643822
Alignment:
Q  51 cttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcg 149  Q
    ||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||| |||||||||||||||| |||  |||||||||||| ||||    
T  19643726 cttaagtcagtaatggaactgagaaagagtgt--gtagaaagtcttgtgaaaagtgaatcataccttgagggtgaaacaagttcacccttatataggcg 19643822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 29157094 - 29157289
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||| ||||||  |||| |||| || |||| |||||||||||||||||| |  |||||||| |||||||| | ||||||||  ||||||||    
T  29157094 aaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaa--gtgtgtagtaagtgttgtgtaaagtgaaccataccttg 29157191  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgt-gaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtag 216  Q
    | ||||||| ||  |||||||||||| |||||  || || ||||||||| |||||||| ||||||  || ||||||| ||||||||||||||| |||||    
T  29157192 atggtgaagtaagttcacccttatataggcgcgcgtagaggataaccgtctctgggttatgcggctaatgattaggg-acggttagaggacacatgtag 29157289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 2674669 - 2674470
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||||||||| || |||| |||| |||| |  |||||| ||||| ||||||||      ||||||||||||||||| ||||||||||| ||||||||    
T  2674669 aaggtgtatgcagtcatgttagcactccaacgcacaagtcaataatgtaactgaga------gtgtgtagaaagtgttgtgaaaagtgaatcataccttg 2674576  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtaga 217  Q
    ||| ||||| ||  ||||||||||||  ||||  | |||  |||||||| || || ||||||||||| | ||||||| || ||||||||||||||||||     
T  2674575 aggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattaggg-acagttagaggacacgtgtagg 2674477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 15514649 - 15514537
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||||||| |||| |||| || ||||||||||||||||||| |||||||  |||||  |||||||| | |||||||  | ||||||||||||||||||    
T  15514649 aggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagt--gtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagca 15514552  T
Q  130 aagtcacccttatat 144  Q
    |  ||||||||||||    
T  15514551 agttcacccttatat 15514537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 215
Target Start/End: Original strand, 10981880 - 10982050
Alignment:
Q  41 cacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcaccctt 140  Q
    |||| ||||||| |||||||||||||||| ||||||||  ||||||| |||||| || ||||||||||| |||| ||| ||| ||| | |||||||||||    
T  10981880 cactccaacactcaagtcagtaatggaaccgagaaaga--gtgtgtaaaaagtg-tgggaaaagtgaatcatacattg-gggagaaactaagtcaccctt 10981975  T
Q  141 atattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgta 215  Q
    |||| | ||  |||||  |||||||  || ||| | |||||| | | |||||||| |||||||||||||| ||||    
T  10981976 atatagacgtgtgtgagaataaccgcctccgggatatgcggcttgtgattagggagcggttagaggacacatgta 10982050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 15742217 - 15742123
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||||||||||| |||||||  |  |||||||| |||||||||  | |||||||||  ||||||||| |||||||||||| |||||    
T  15742217 aagtcagtaatggaactgagaaaaagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttgagactgaagcaaattcacccttatataggcgc 15742123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 5518540 - 5518661
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| ||||||||| || ||||||||||| ||||||||| ||| |||||  |  |||||||| | |||||||    |||||||||||||||    
T  5518540 tgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgt--aagaagtgttgtggaaagtgatgcgtaccttgagggtgaa 5518637  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
    ||||  |||||||||||| |||||    
T  5518638 gcaagttcacccttatataggcgc 5518661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 14602106 - 14601991
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| || | |||| || |||||||||||| ||||||  ||||| |||||||  |||||||| ||||||||   | |||||||||||||||    
T  14602106 tgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactga--aagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaa 14602009  T
Q  127 gcaaagtcacccttatat 144  Q
    ||||  ||| ||||||||    
T  14602008 gcaagttcatccttatat 14601991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 16012562 - 16012505
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgt 84  Q
    |||||||||||||||||| | || || ||||||||||||||||||||| |||||||||    
T  16012562 tgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgt 16012505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 50151823 - 50151775
Alignment:
Q  101 aaagtgaattataccttgagggtgaagcaaagtcacccttatattggcg 149  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  50151823 aaagtaaatcataccttgagggtgaagcaaagtcacccttatataggcg 50151775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 13171079 - 13171134
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgt 82  Q
    ||||||||||||| |||| |||| || |||||||||||||||||||| ||||||||    
T  13171079 tgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgt 13171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 19818745 - 19818800
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcac 136  Q
    ||||||||||||||||| ||||||||||||||||||||| | |||| | |||||||    
T  19818745 gtgtgtagaaagtgttgtgaaaagtgaattataccttgatgatgaaactaagtcac 19818800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 14003128 - 14003075
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaat 109  Q
    ||||||||||||||||||||||||||| ||||  |||||||||  ||||| |||||    
T  14003128 aagtcagtaatggaactgagaaagagtttgtg--gaaagtgttatgaaaaatgaat 14003075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 16030387 - 16030702
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||||||||||| || |  ||  || |||||||||||||||||||  ||||||||  ||||||||||||| ||||||||||| ||||||||    
T  16030387 aaggtgtctgcaggcacgttatcagtcaaatgctcaagtcagtaatggaactgaataagagtgt--gtagaaagtgttgtgaaaagtgaatcataccttg 16030484  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagag 218  Q
    |||| ||||| ||| ||||||||||| ||||||  ||||||||| |   || || ||||| ||||| | |||||||| ||||||||| |||||| ||||     
T  16030485 agggcgaagctaagccacccttatataggcgcacatgaagataa-ctactccggattttgtggcgtgtgattagggagcggttagagaacacgtttagaa 16030583  T
Q  219 tgatccgcgtgcagaggcgtgcctggaagcgatgtggtgcac-gatgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacg 317  Q
    |||||| || || ||||| ||| |||| |||||  |||||||  | |||  | |||||||||  || || ||||||||||| ||| |||||| |||||||    
T  16030584 tgatccacgcgcggaggcatgcttggatgcgatacggtgcactaaagttttcgtgttccttcaggcattaagccttaaggcggtgcatgtattgtccacg 16030683  T
Q  318 tgtcaatatgggattggtc 336  Q
    |||||||| ||||||||||    
T  16030684 tgtcaataggggattggtc 16030702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 12177391 - 12177501
Alignment:
Q  32 gcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaa 131  Q
    |||||||| |||| | ||||| |||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||  |||||||     
T  12177391 gcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgt--gtagaaagtgttgtgaaaagtgaattataccttgaggaggaagcaag 12177488  T
Q  132 gtcacccttatat 144  Q
     ||| ||||||||    
T  12177489 ttcaaccttatat 12177501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 26977740 - 26977861
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| |||| || |||||||||||||||| ||||||||  ||||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  26977740 tgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaaga--gtgtgtagaaagtattgtgaaaaatgaatcataccttgagggtgaa 26977837  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
    ||||  | |||||||||| |||||    
T  26977838 gcaatttgacccttatataggcgc 26977861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 5671762 - 5671885
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| || |||||||||| |||| |||| || |||| ||||||||||||||||||||  ||||||||||||||||| ||||||||||| |||| |||    
T  5671762 aaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaaga--gtgtgtagaaagtgttgtgaaaagtgaatcatacattg 5671859  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    | |||||||  ||||||| |||||||    
T  5671860 aaggtgaagttaagtcactcttatat 5671885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 16050394 - 16050509
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| |||| || |||||| | ||||||||||||||||||||  ||||||||||| | ||||||||||  ||||||||||| ||||    
T  16050394 tgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgt--gtagaaagtgtggtgaaaagtgaaccataccttgaggatgaa 16050491  T
Q  127 gcaaagtcacccttatat 144  Q
    |||| | |||||||||||    
T  16050492 gcaatgccacccttatat 16050509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 34273087 - 34273202
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| |||||||| |||| |||  || |||||||||| ||||||||||||||||||  ||||||||||||| | ||||||| | ||||||||||||||||    
T  34273087 tgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgt--gtagaaagtgttgtgtaaagtgactcataccttgagggtgaa 34273184  T
Q  127 gcaaagtcacccttatat 144  Q
    |||| ||| |||||||||    
T  34273185 gcaatgtcgcccttatat 34273202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 33101606 - 33101485
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||||||||||| |||| |||| || ||||| ||||||||||||||||| |  ||||||||||||||||| ||||||||||   || ||||    
T  33101606 aaggtgcatgcaggcacgttagcactccaacgctcaagtcggtaatggaactgagaaaaa--gtgtgtagaaagtgttgtgaaaagtgaaccgtaacttg 33101509  T
Q  119 agggtgaagcaaagtcacccttat 142  Q
    |||||||| ||| |||||| ||||    
T  33101508 agggtgaaacaatgtcacctttat 33101485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 2140986 - 2140853
Alignment:
Q  82 tgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcgg 181  Q
    |||||||||||||||| | ||||||||  |||||||||||||||||| ||||||||||||||  | |||  ||||  ||||||  ||  |||||||| ||    
T  2140986 tgtgtagaaagtgttgtggaaagtgaaccataccttgagggtgaagctaagtcacccttataaagacgcgcgtgagaataaccactttcgggttttgtgg 2140887  T
Q  182 cgtataattagggaacggttagaggacacgtgta 215  Q
     || | |||||| |||||||||||||||||||||    
T  2140886 tgtgtgattaggaaacggttagaggacacgtgta 2140853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 52565607 - 52565700
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcg 149  Q
    |||||||||| |||||||| |||||||| |   ||||||||||| ||||||||||| ||| ||||||||||||||||  ||| |||||||||||||    
T  52565607 aagtcagtaaaggaactgaaaaagagtgcgc--agaaagtgttgtgaaaagtgaatcataacttgagggtgaagcaagttcatccttatattggcg 52565700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 22414776 - 22414876
Alignment:
Q  28 gcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaag 127  Q
    |||||||||||| ||||   || || |||||||||||| |||||| ||| |||||  ||||||||||||| ||||||||||| ||| |||||||||||||    
T  22414776 gcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgt--gtagaaagtgttgtgaaaagtgaatcatatcttgagggtgaag 22414873  T
Q  128 caa 130  Q
    |||    
T  22414874 caa 22414876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 23728919 - 23728789
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||||||||||| || |   || || |||||| |||||||| |||||||||||||||  |  |||||||| |||||||||  | |||||||    
T  23728919 aaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttg 23728822  T
Q  119 agggtgaagcaaagtcacccttatattggcgca 151  Q
    |||||||| |||  |||||||||||| ||||||    
T  23728821 agggtgaaacaagttcacccttatataggcgca 23728789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 18246135 - 18246257
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| || | ||||||||||||| |||| || |||| |||| | ||| ||||||||||||| |  | ||||||| | ||||||||| | ||||||||    
T  18246135 aaggtgtctgtaagcacgttaacactccaacgctcaagtgagtattagaattgagaaagagtgtat--aaaaagtgt-gagaaaagtgattcataccttg 18246231  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    |||||||||  |||||||||||||||    
T  18246232 agggtgaagataagtcacccttatat 18246257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 23280324 - 23280238
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||||||||||||||||| ||||||    | ||||||| ||||||||||| || || ||||||||||||||  ||||| ||||||    
T  23280324 aagtcagtaatggaactgagaaagtgtgtgt----atagtgttgtgaaaagtgaataatgccatgagggtgaagcaagttcacctttatat 23280238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 25408096 - 25408207
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| |||| |||  || |||||||||||| ||||||  ||||| |||||||  |||||||| |||||||||  | | |||||||||||||    
T  25408096 tgcagacacgttagcactccaatgctcaagtcagtaatgaaactga--aagagagtgtgtaagaagtgttgtgaaaagtgatgtgtcccttgagggtgaa 25408193  T
Q  127 gcaaagtcaccctt 140  Q
    ||||  ||||||||    
T  25408194 gcaagttcaccctt 25408207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 8019018 - 8019085
Alignment:
Q  99 gaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgt 166  Q
    ||||||||||| |||||||| ||||||||| | ||||||||||||| ||||  |||||  ||||||||    
T  8019018 gaaaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgt 8019085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 1659597 - 1659544
Alignment:
Q  313 ccacgtgtcaatatgggattggtcttcttgccggttcagaacaataattatttt 366  Q
    |||||||||||  || ||||||||||||  |||||||||||||||||| |||||    
T  1659597 ccacgtgtcaacgtgtgattggtcttctgaccggttcagaacaataataatttt 1659544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 12032291 - 12032223
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||||| | ||| ||||| ||| ||||| |||||| | ||||||||||||||| |||||    
T  12032291 gtgtgtagaaagtgttgtgtaaaatgaatcataacttga-ggtgaaactaagtcacccttatataggcgc 12032223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 1659874 - 1659765
Alignment:
Q  33 cacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaag 132  Q
    ||||||| |||| |||| || |||||| ||||||| |||||||||| |||||  |  |||||||| |||||||||   ||| |||| ||||| |||||      
T  1659874 cacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgt--aagaagtgttgtgaaaagtgagaaatatcttgtgggtggagcaagt 1659777  T
Q  133 tcacccttatat 144  Q
    ||||||||||||    
T  1659776 tcacccttatat 1659765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 5459807 - 5459619
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||||| |||||| |||| ||||  | ||  |||||| ||| ||||||||||||||||  ||||||||||| | ||||||||| |||| |||    
T  5459807 aaggtgcatgcaggtacgttagcactccaacgttcaaaacagtaacgga-ctgagaaagagtgtgt--agaaagtgttgtgtaaagtgaatcatacattg 5459711  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacac 210  Q
     || |||||  |||||| ||| | || | |||  ||||  ||||||||  | | |||||||||||| | |||||||| | |||| |||||||    
T  5459710 gggatgaagttaagtcagcctaacatagacgcgcgtgagaataaccgtcaccgtgttttgcggcgtgtgattagggagcagttaaaggacac 5459619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 21682667 - 21682561
Alignment:
Q  41 cacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcaccctt 140  Q
    |||| |||| || ||||||||||||||||| |||| ||| |||||||  || | ||| ||||||| |  | |||||||||||||| ||||| ||||||||    
T  21682667 cactccaacgctcaagtcagtaatggaact-agaa-gagagtgtgtaagaaatattgtgaaaagtaatgtgtaccttgagggtgacgcaaattcaccctt 21682570  T
Q  141 atattggcg 149  Q
    |||| ||||    
T  21682569 atataggcg 21682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 27083333 - 27083021
Alignment:
Q  22 gtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagg 121  Q
    |||| ||||| ||||||| |||| ||||||| |||||||||| | ||||| ||||||||||||  ||||||||||| ||||||||||| |||||||||||    
T  27083333 gtgtctgcagacacgttagcactccaacactcaagtcagtaa-gaaactgtgaaagagtgtgt--agaaagtgttgtgaaaagtgaatcataccttgagg 27083237  T
Q  122 gtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtga 221  Q
    ||||||  |||||||||||  || |||||  ||||  ||||| || ||  ||||||||||||| | ||||| || | |||||||||||||| ||| | ||    
T  27083236 gtgaagttaagtcacccttgcataggcgcgcgtgagaataactgtctccaggttttgcggcgtgtgattagagagcagttagaggacacgt-tagcggga 27083138  T
Q  222 tccgcgtgcagaggcgtgcctggaagcgatgtggtgcac-gatgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacgtgt 320  Q
    ||| ||||| ||||||||  || |||| |  | ||| || || |||||  ||||||||| ||||||||||||||||||   ||| |||||||||||||||    
T  27083137 tcctcgtgcggaggcgtgtttgaaagcaacattgtgtacggaagttggtgtgttccttc-agcgttgagccttaaggcgacgtaagtatagtccacgtgt 27083039  T
Q  321 caatatgggattggtctt 338  Q
    ||| || |||||||||||    
T  27083038 caacataggattggtctt 27083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 30 - 144
Target Start/End: Original strand, 22903096 - 22903208
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    ||||| |||| ||||||||| || |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| |||||||||||||||| ||    
T  22903096 aggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgt--gtagaaagtgttgtgaaaagtgaatcataccttgagggtgaaaca 22903193  T
Q  130 aagtcacccttatat 144  Q
    |  ||||||||||||    
T  22903194 atatcacccttatat 22903208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 20025275 - 20025576
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||  |||||||||||| |||| ||   ||||| |||| ||||||||||||||||  ||||||||||||| | ||||||||| || |||||    
T  20025275 aaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgt--gtagaaagtgttgtgtaaagtgaatcattccttg 20025372  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagag 218  Q
    |||||||||| | ||||||||||||  |||||  ||||  |||||||| || |||||||| || || | ||||||||  ||||| ||| || ||||||||    
T  20025373 agggtgaagctaggtcacccttatacaggcgcgcgtgagaataaccgtctccgggttttgtggtgtgtgattagggagtggttataggtcatgtgtagag 20025472  T
Q  219 tgatccgcgtgcagaggcgtgcctggaagcgatgtggtgcac-gatgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacg 317  Q
     ||||| || ||   ||| ||| ||||  |||||||||| ||   ||||| | ||||||||| | | | ||||||||||||  ||||||| || ||||||    
T  20025473 cgatcctcgcgcgagggcatgcttggatacgatgtggtgtacttttgttgacgtgttccttcaaacatcgagccttaaggcgatgtatgtttaatccacg 20025572  T
Q  318 tgtc 321  Q
    ||||    
T  20025573 tgtc 20025576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 26994705 - 26994511
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| | ||| ||||||| |||| | || || ||||||||||||||| ||||||||||||| |  |||| |||||| ||||||||||| ||||||||    
T  26994705 aaggtgtcttcagacacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgttt--agaaggtgttgtgaaaagtgaatcataccttg 26994608  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaaga-taaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgta 215  Q
     ||||||||||| ||||||||||||| |||||  ||  ||| ||||||| |  | |||||||||||| | ||||||| ||| ||||||||||| ||||    
T  26994607 ggggtgaagcaaggtcacccttatataggcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgattaggg-acgattagaggacacatgta 26994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 8938904 - 8939026
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||||||||||||||||| |||  ||  |||||||| |||||||||||||||  ||||||| |||||| || ||||||||||| |||| |||    
T  8938904 aaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaaga--gtgtgtaaaaagtg-tgggaaaagtgaatcatacattg 8939000  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    |||||||||| |||||||| ||||||    
T  8939001 agggtgaagctaagtcaccgttatat 8939026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 22865753 - 22865881
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||||| |||||| |||||  || || |||| |||||||||||||||||| |||||||  ||||| ||||| |||||||||  | |||||||    
T  22865753 aaggtgcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgt-aagaaa-tgttgtgaaaagtgatgtgtaccttg 22865850  T
Q  119 agggtgaagcaaagtcacccttatattggcg 149  Q
    ||||||||||||  |||||||||||| ||||    
T  22865851 agggtgaagcaagttcacccttatataggcg 22865881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 24647298 - 24647409
Alignment:
Q  37 ttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcac 136  Q
    |||||||| |||| || || |||||||||||||||| |||||||||||  |  |||||||| |||||||||  |||||||| ||||||||||||  ||||    
T  24647298 ttaacactccaacgctcaattcagtaatggaactgaaaaagagtgtgt--aagaagtgttgtgaaaagtgatgtataccttaagggtgaagcaagttcac 24647395  T
Q  137 ccttatattggcgc 150  Q
    |||||||| |||||    
T  24647396 ccttatataggcgc 24647409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 34493567 - 34493625
Alignment:
Q  83 gtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcaccctta 141  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||    
T  34493567 gtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaaactaagtcaccctta 34493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 16621200 - 16621264
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtg 83  Q
    |||||||||| |||||||||||||||||||| || ||| || || ||||||||||||||||||||    
T  16621200 aaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaagagtgtg 16621264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 25537405 - 25537526
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| |||||||| |||| |||| || |||   ||||||||||||||||||| ||||| |   |||||||| |||||||||  |||||||||||||||||    
T  25537405 tgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatg--aagtgttgtgaaaagtgatgtataccttgagggtgaa 25537502  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
    | ||  |||||||||||| |||||    
T  25537503 gaaagttcacccttatataggcgc 25537526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 32418577 - 32418382
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||| ||||||   || || |||||| | ||||||| ||||||||||||||  ||| ||||||| ||| ||||||| ||||||||||| ||||    
T  32418577 tgcaggcacgtcaacactctgacgctcaagtcactgatggaacagagaaagagtgtgt--agagagtgttgtgaagagtgaatcataccttgaggatgaa 32418480  T
Q  127 gcaaagtcacccttatattggcgcatgtgaag-ataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||  |||||||| ||| | ||   || |||  |||| || || ||||| |||||||| | ||||||| | |||||| |||||||||||| |||||||    
T  32418479 gcaagttcacccttgtatagacgtgcgttaagcttaactgtctccgggttatgcggcgtgtgattaggg-atggttaggggacacgtgtagggtgatcc 32418382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 26163700 - 26163848
Alignment:
Q  112 taccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggtt-agaggacac 210  Q
    |||||||| |||||||| || |||||||||||| ||||    | ||||||||  | ||  ||||||||||||||| || ||||| || || |||||||||    
T  26163700 taccttgaaggtgaagctaattcacccttatataggcgttcataaagataactttatccaggttttgcggcgtatgatcagggagcgatttagaggacac 26163799  T
Q  211 gtgtagagtgatccgcgtgcagaggcgtgcctggaagcgatgtggtgca 259  Q
    |||||||||||||| || |  |||| |||| |||  |||||||||||||    
T  26163800 gtgtagagtgatcctcgcgtggaggtgtgcttgggtgcgatgtggtgca 26163848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 25333762 - 25333850
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||  |||||||||| |||| ||||| |||||||||  |||| |||||||    
T  25333762 aagtcagtaatgtaactaagagagagtgt--gtagaaagtgttgttaaaagtgaatcatactttgagagtgaagcaagttcactcttatat 25333850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 26348099 - 26348057
Alignment:
Q  112 taccttgagggtgaagcaaagtcacccttatattggcgcatgt 154  Q
    |||||||||||||||||||  |||||||||||| |||||||||    
T  26348099 taccttgagggtgaagcaagttcacccttatataggcgcatgt 26348057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 95901 - 95786
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||||||||||||| ||  ||||||||||| ||||||||||| ||||||| ||||||||    
T  95901 tgcaggcacgttaccacttcaacgctcaagttagtaatggaactgagaaagagtgcgt--agaaagtgttgtgaaaagtgaatcataccttcagggtgaa 95804  T
Q  127 gcaaagtcacccttatat 144  Q
    |||| |||||||||||||    
T  95803 gcaacgtcacccttatat 95786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 95756 - 95706
Alignment:
Q  173 gttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    |||||||||||| | |||||||| |||||||||||||| |||||||||||||    
T  95756 gttttgcggcgtgtgattaggga-cggttagaggacacatgtagagtgatcc 95706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 26763002 - 26762791
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| |||| |||| || |||||||||| |||||| | ||| |||||||  ||||||||||| ||||||||||| ||||||||||||||||    
T  26763002 tgcaggcacgttagcactccaacgctcaagtcagtaaaggaactcataaatagtgtgt--agaaagtgttgtgaaaagtgaatcataccttgagggtgaa 26762905  T
Q  127 gcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatccg 225  Q
    |||| | ||||| ||||| ||||| || ||  |||||||   || |||||||| ||||| | ||||||| ||||||||||||||| ||||  |||||||     
T  26762904 gcaaggacacccatatataggcgcgtgttgttgataaccacctccgggttttggggcgtgtgattaggg-acggttagaggacacttgtatggtgatcct 26762806  T
Q  226 cgtgcagaggcgtgc 240  Q
    || |||| |||||||    
T  26762805 cgcgcaggggcgtgc 26762791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 9135449 - 9135337
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||||||| ||||  ||| || ||||||||||||||| |||||||||||||||  | ||| ||||| ||||||||||| |||||||||||||||||||    
T  9135449 aggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgt--aaaaactgttgtgaaaagtgaatcataccttgagggtgaagca 9135352  T
Q  130 aagtcacccttatat 144  Q
    || ||||||||||||    
T  9135351 aattcacccttatat 9135337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 5863187 - 5863388
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| |||||||| ||||  ||| || ||||||||||| |||||||||||||||||  ||||||| |||||  |||||||||| |||||||||||||| |    
T  5863187 tgcaagcacgttagcactcaaacgctcaagtcagtaatcgaactgagaaagagtgt--gtagaaaatgttgtaaaaagtgaatcataccttgagggtgga 5863284  T
Q  127 gcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatccg 225  Q
    |||| ||||||||| ||| |||||  | || | |||||||  || ||||||  |||| | | ||||||| ||||||||||||||||||||  |||||||     
T  5863285 gcaatgtcacccttgtataggcgcgcgttggaaataaccgcctccgggtttcacggcatgtgattaggg-acggttagaggacacgtgtaacgtgatcct 5863383  T
Q  226 cgtgc 230  Q
    |||||    
T  5863384 cgtgc 5863388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 16203774 - 16203922
Alignment:
Q  81 gtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcg 180  Q
    ||||||| ||||||||  ||||||||||  ||||||| ||||||||| |||||||||||||||| || ||  | |  ||||||||| || | |||| | |    
T  16203774 gtgtgtataaagtgttatgaaaagtgaaccataccttaagggtgaagaaaagtcacccttatataggagctcgcgttgataaccgtctccgtgtttcgtg 16203873  T
Q  181 gcgtataattagggaacggttagaggacacgtgtagagtgatccgcgtg 229  Q
    |||| | |||||||| |||||||||||||||||||| ||||||| ||||    
T  16203874 gcgtgtgattagggagcggttagaggacacgtgtagggtgatcctcgtg 16203922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 7486537 - 7486659
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||||||||||| |||| |||| || || ||||||||||||||||||||||   ||||||||| |||||| ||||||||||| || ||||     
T  7486537 aaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaaga--ttgtgtagaaggtgttgtgaaaagtgaatcatccctta 7486634  T
Q  119 agggtgaagcaaagtcacccttata 143  Q
    | ||||||| ||  |||||||||||    
T  7486635 aaggtgaagaaagttcacccttata 7486659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 16204338 - 16204486
Alignment:
Q  76 agagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggtt 175  Q
    |||| ||||||| ||||||||| ||||||||||  ||||||| ||||||||| ||| |||||||||||| || ||  | |  ||||||||| || | |||    
T  16204338 agagagtgtgtataaagtgttgtgaaaagtgaaccataccttaagggtgaagaaaattcacccttatataggagcccgcgttgataaccgtctccgtgtt 16204437  T
Q  176 ttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    |   ||||| | |||||||| |||||||||||||||||||| |||||||    
T  16204438 tcatggcgtgtgattagggagcggttagaggacacgtgtagggtgatcc 16204486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 12644777 - 12644897
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgtt-gcgaaaagtgaattatacctt 117  Q
    |||||| ||||||||| |||| |||| | || || | ||||||||||||||||||||| ||||||||  ||||||||| | |||||||||||| ||| ||    
T  12644777 aaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtg--gaaagtgttggtgaaaagtgaattgtacgtt 12644874  T
Q  118 gagggtgaagcaaagtcaccctt 140  Q
    |||||||||||||  ||||||||    
T  12644875 gagggtgaagcaagttcaccctt 12644897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 39879387 - 39879503
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttga-gggtga 125  Q
    ||||| ||||||||||||| ||| || |||||||||||| ||||||||||||  ||||||| |||||||||  |||||||||| || || ||| ||| ||    
T  39879387 tgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaaga--gtgtgtaaaaagtgttgtaaaaagtgaatcatgccatgagggggga 39879484  T
Q  126 agcaaagtcacccttatat 144  Q
    ||||| |||||||||||||    
T  39879485 agcaatgtcacccttatat 39879503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 21161236 - 21161326
Alignment:
Q  22 gtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattatac 114  Q
    |||| ||||||||||||| |||| |||| || |||||||||||||| || ||||  |||||||||||||||||||| ||||||||||| ||||    
T  21161236 gtgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaa--agtgtgtgtagaaagtgttgtgaaaagtgaatcatac 21161326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 13292222 - 13292093
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||||| |||||| ||||  ||| || |||||||||||| |||||| |||||||||||  |  |||||||| |||||||||  | |||||||    
T  13292222 aaggtgtctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttg 13292125  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||  ||||| |||||| |||||    
T  13292124 agggtgaagcaagttcaccattatataggcgc 13292093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 29373438 - 29373567
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||||||| ||||  ||| |||  || ||||||||  || || |||||||||||||  ||||||| ||||| ||||| ||||| ||||||||    
T  29373438 aaggtgcatgcaggcatgttaggactccaatgctcaagtcagttgtgtaattgagaaagagtgt--gtagaaaatgttgtgaaaattgaatcataccttg 29373535  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||||| |||||||| |||| |||||    
T  29373536 agggtgaagcaatgtcaccctcatataggcgc 29373567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 140
Target Start/End: Complemental strand, 5929100 - 5928991
Alignment:
Q  29 caggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagc 128  Q
    ||||||| ||| |||| ||||||| |||||||||||||||||  ||||||| | |||||  |||||||| |||||||||  | | ||||| |||||||||    
T  5929100 caggcacattagcactccaacactcaagtcagtaatggaact--gaaagagagagtgtaagaagtgttgtgaaaagtgatgtgtcccttgggggtgaagc 5929003  T
Q  129 aaagtcaccctt 140  Q
    ||| ||||||||    
T  5929002 aaattcaccctt 5928991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 9868038 - 9867938
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||||| |||||| ||||   || || |||||||||||||||||||| |||||| |||  |||||||||||  |||||||||| ||||||||    
T  9868038 aaggtgcatgcaggaacgttagcactctgacgctcaagtcagtaatggaactgaggaagagtttgt--agaaagtgttgttaaaagtgaatcataccttg 9867941  T
Q  119 agg 121  Q
    |||    
T  9867940 agg 9867938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 355
Target Start/End: Original strand, 13159591 - 13159685
Alignment:
Q  261 gatgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacgtgtcaatatgggattggtcttcttgccggttcagaaca 355  Q
    ||||||||| |||||||||  |||| |||||||||||| |||||||| ||||||||||||||   | ||||||  ||||| |||||| |||||||    
T  13159591 gatgttggcgtgttccttcaggcgtcgagccttaaggcggtgtatgtttagtccacgtgtcatcgttggattgaccttctggccggtccagaaca 13159685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 10287687 - 10287566
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| ||| | ||| || |||||||||||||| |||||||| |  |||||||  |||||||| |||||||||   |||||||||||||| |    
T  10287687 tgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaa--gtgtgtaagaagtgttgtgaaaagtgagagataccttgagggtgta 10287590  T
Q  127 gcaaagtcacccttatattggcgc 150  Q
     |||  | |||||||||| |||||    
T  10287589 acaagtttacccttatataggcgc 10287566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 16987191 - 16987062
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||| ||||||||| ||||   ||||| ||| ||||||||||| |||||||||||  |||||  |||||||| |||||||||  | | ||||     
T  16987191 aaggtgcatgcgggcacgttagcactctgacactcaagccagtaatggaattgagaaagagt--gtgtaagaagtgttgtgaaaagtgatgtgtccctta 16987094  T
Q  119 agggtgaagcaaagtcacccttatattggcgc 150  Q
    | ||||||||||  |||||||||||| |||||    
T  16987093 aaggtgaagcaagttcacccttatataggcgc 16987062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 43172065 - 43172006
Alignment:
Q  91 agtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||| ||||||||||| |||| |||||||||||||||  |||||||||||| |||||    
T  43172065 agtgttgtgaaaagtgaatcatacattgagggtgaagcaacttcacccttatataggcgc 43172006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 21161342 - 21161395
Alignment:
Q  116 ttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttc 169  Q
    |||||||||||||||||||||||||| || |||||  ||||||||||| |||||    
T  21161342 ttgagggtgaagcaaagtcacccttacataggcgctcgtgaagataactgtttc 21161395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 5925574 - 5925519
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgaga 74  Q
    ||||||| ||||||||||||| |||| ||||  | |||||||||||||||||||||    
T  5925574 aaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgaga 5925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 13159444 - 13159487
Alignment:
Q  113 accttgagggtgaagcaaagtcacccttatattggcgcatgtga 156  Q
    |||||||||||||||| || |||||||||||| |||||||||||    
T  13159444 accttgagggtgaagctaaatcacccttatataggcgcatgtga 13159487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 9801174 - 9801060
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| |||||||| |||| ||||||| ||||||||||| |||| ||||||||||||||  ||||||||||| ||||||||||| ||||||||||||||||    
T  9801174 tgcaagcacgttagcact-caacactcaagtcagtaatagaacagagaaagagtgtgt--agaaagtgttgtgaaaagtgaatcataccttgagggtgaa 9801078  T
Q  127 gcaaagtcacccttatat 144  Q
    |||| |||||||||||||    
T  9801077 gcaatgtcacccttatat 9801060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 21342386 - 21342263
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||| |||||||||||||||||| | |||| || ||||||||||||||||||| |||||  |||| |||||||||||| ||||||||||| |||| |||    
T  21342386 aaggtatatgcaggcacgttaacagtacaacgctcaagtcagtaatggaactgataaaga--gtgtatagaaagtgttgtgaaaagtgaatcatacattg 21342289  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    ||||||||| || || ||||||||||    
T  21342288 agggtgaagtaaggttacccttatat 21342263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 30606955 - 30607109
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatg 153  Q
    ||||||||||||||| |||||||||||| ||  ||||||||||| ||||||||||||||||||||||||||||| || | ||||||||||| |||||  |    
T  30606955 aagtcagtaatggaattgagaaagagtgagt--agaaagtgttgtgaaaagtgaattataccttgagggtgaagtaaggccacccttatataggcgcgcg 30607052  T
Q  154 tgaag-ataaccgtttctgggttttgcggcgtataattagggaacggttagaggacac 210  Q
    | ||| ||||| || || |||||| || |||| | ||||||| |||||||||||||||    
T  30607053 ttaagaataactgtctccgggtttcgccgcgtgtgattaggg-acggttagaggacac 30607109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 17143837 - 17143725
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||||||| |||| | || || |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||| ||||||| ||    
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgt--agaaagtgttgtgaaaagtgaatcataccttgggggtgaaaca 17143740  T
Q  130 aagtcacccttatat 144  Q
    |  ||||||||||||    
T  17143739 acatcacccttatat 17143725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 16704429 - 16704523
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||  |||||||||| ||||  ||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  16704429 aagtcagtaatggagttgagaaagagagtgt--agaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcgc 16704523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 28715551 - 28715465
Alignment:
Q  55 agtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttata 143  Q
    |||||||||||||||||||||||||||||| ||  |||||||| ||||||||||| |||||||||||||||| |||  |||||||||||    
T  28715551 agtcagtaatggaactgagaaagagtgtgtata--aagtgttgtgaaaagtgaatcataccttgagggtgaaacaatatcacccttata 28715465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 8123013 - 8122893
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||||||||||||||||| |||| |||| || |||||||||||| || ||| |||     | ||| ||||| |||| ||||||||||| ||||||||    
T  8123013 aaggtgtatgcaggcacgttagcactccaacgctcaagtcagtaatgaaattgaaaaaac---tatgtcgaaagcgttgtgaaaagtgaatcataccttg 8122917  T
Q  119 agggtgaagcaaagtcacccttat 142  Q
    |||||||||||| |||||||||||    
T  8122916 agggtgaagcaatgtcacccttat 8122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 431401 - 431286
Alignment:
Q  33 cacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaag 132  Q
    ||||||| |||||| || || |||||| ||||||||||||||||||||| |||  ||||||| || |||||||||||| | ||||||||||||||||       
T  431401 cacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtg--gaaagtgctgtgaaaagtgaattgtcccttgagggtgaagcatgt 431304  T
Q  133 tcacccttatattggcgc 150  Q
     ||||||||||| |||||    
T  431303 ccacccttatataggcgc 431286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 13084947 - 13084839
Alignment:
Q  232 gaggcgtgcctggaagcgatgtggtgcacg-atgttggcttgttccttcgagcgttgagccttaaggcagtgtatgtatagtccacgtgtcaatatggga 330  Q
    ||||||||| |||| |||| |||||||||  |||||||| |||| ||||| ||||||||||||||| ||||||||| |||||| |||||||| || ||||    
T  13084947 gaggcgtgcttggatgcgacgtggtgcacatatgttggcgtgtttcttcg-gcgttgagccttaagacagtgtatgaatagtcaacgtgtcagtacggga 13084849  T
Q  331 ttggtcttct 340  Q
    || |||||||    
T  13084848 ttagtcttct 13084839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 20622406 - 20622523
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||||||| ||||||||||  || || ||||||||||||  |  |||||| |||||||  | |||||| || ||||||||||| ||||||||||||||||    
T  20622406 tgcaggcatgttaacactttgacgctcaagtcagtaatgagatagagaaatagtgtgtagataaagtggtgtgaaaagtgaatcataccttgagggtgaa 20622505  T
Q  127 gcaaagtcacccttatat 144  Q
    ||||  ||||||||||||    
T  20622506 gcaagttcacccttatat 20622523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 2311872 - 2311812
Alignment:
Q  82 tgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttat 142  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||||    
T  2311872 tgtgtagaaagtgttgtgaaaggtgaatcataccttgagggtgaagcaatgtcacccttat 2311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 28723838 - 28723669
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc-at 152  Q
    |||||| |||||||||| |||||||||||||  ||||| ||||| |||||||||||  || || ||||||||| ||| |||| |||||||| |||||  |    
T  28723838 aagtcactaatggaactaagaaagagtgtgt--agaaaatgttgtgaaaagtgaatcgtatctggagggtgaaacaatgtcatccttatataggcgcgct 28723741  T
Q  153 gtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
     |||  ||||| || ||||| ||||||  ||| | || ||||| || ||||||||||| ||||| |||||||    
T  28723740 ttgagaataactgtctctggattttgcaacgtgtgatcagggagcgattagaggacacatgtagggtgatcc 28723669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 12516185 - 12516300
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| |||| | || || |||| |||||||||||||||||||| |||||  |  |||||||| |||||||||  | |||||||||||||||    
T  12516185 tgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgt--aataagtgttgtgaaaagtgatatgtaccttgagggtgaa 12516282  T
Q  127 gcaaagtcacccttatat 144  Q
    ||||  ||||| ||||||    
T  12516283 gcaagttcacctttatat 12516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 14860160 - 14860069
Alignment:
Q  57 tcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||||||||||||| ||| |||  |  |||||||| |||||||||  | |||||||||||||||||||  |||||||||||| |||||    
T  14860160 tcagtaatggaactgagaaacagtttgt--aagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcgc 14860069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 12731623 - 12731537
Alignment:
Q  56 gtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||| |||||||||||||||||||||| |  |  |||||||| |||||||||  |  ||||||||||||||||||  ||||||||||||    
T  12731623 gtcattaatggaactgagaaagagtgtat--aagaagtgttgtgaaaagtgatgtgaaccttgagggtgaagcaagttcacccttatat 12731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 17485688 - 17485608
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcac 136  Q
    ||||||||||||||| |||||| ||||||||  ||||  ||||| | ||| |||||  |||||||||||||||||||| ||||    
T  17485688 aagtcagtaatggaattgagaaggagtgtgtagagaa--tgttgtgtaaaatgaatagtaccttgagggtgaagcaaaatcac 17485608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 1770852 - 1770903
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtga 107  Q
    |||| ||||||||||||||| ||||  ||||||||||||||||| |||||||||    
T  1770852 aagttagtaatggaactgaggaaga--gtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 6109741 - 6109699
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactga 72  Q
    |||||||||| |||| ||||||||||||||||||| |||||||    
T  6109741 aggcacgttagcactccaacacttaagtcagtaatcgaactga 6109699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 25495965 - 25496103
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatg 153  Q
    |||||||||||  ||||||||||||||||||  |  ||| ||||  ||||||||  | |||||| | ||||||||||  |||||||||||| |||||| |    
T  25495965 aagtcagtaatcaaactgagaaagagtgtgt--aagaagagttgaaaaaagtgatgtgtaccttaaaggtgaagcaagttcacccttatataggcgcacg 25496062  T
Q  154 -tgaagataaccgtttctgggttttgcggcgtataattagg 193  Q
     |||  |||||||| || ||||| |||||||| | ||||||    
T  25496063 ttgatcataaccgtctccgggttatgcggcgtgtgattagg 25496103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 13754762 - 13754936
Alignment:
Q  31 ggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaa 130  Q
    |||||||||||||| || | || |||||||||||| ||||||||||||||||  ||||||||||||| | |||||||||  ||||||||||||||||| |    
T  13754762 ggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgt--gtagaaagtgttgtgtaaagtgaatcctaccttgagggtgaagcta 13754859  T
Q  131 agtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagagga 207  Q
    |||||| ||||||| ||| |   |||  |||||||| |  || ||||||||||| | ||||| ||||||||||||||    
T  13754860 agtcactcttatataggcacgcatgagaataaccgtcttcggattttgcggcgtgtgattagtgaacggttagagga 13754936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 34 - 224
Target Start/End: Complemental strand, 6928174 - 6927990
Alignment:
Q  34 acgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagt 133  Q
    |||||| || ||||||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||||||| ||||||||||||||||  ||  |    
T  6928174 acgttagcatttcaacactcaagtcagtaatggaactgagaaagagt--gtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaattaattt 6928077  T
Q  134 cacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||||||    ||||   | |||  |||||||| ||  |||||||| |||| | |||| |||||||| |||||||||||||||||||||||    
T  6928076 caccctta----ggcgtgcgttgagaataaccgtctccaggttttgcagcgtgtgatta-ggaacggtaagaggacacgtgtagagtgatcc 6927990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 30477641 - 30477761
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    |||| |||||||| |||| |||| || |||||||||| | ||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  30477641 tgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgt--gtagaaagtgttgtgaaaagtgaatcataccttgagggtgaa 30477738  T
Q  127 gcaaagtcacccttatattggcg 149  Q
    | || ||||||||||||| ||||    
T  30477739 gtaatgtcacccttatataggcg 30477761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 18322935 - 18323058
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||| || ||||||||| |||| || ||||||||||| ||||||||||||| |||||  ||||| ||||| ||||||||||| |||| |||    
T  18322935 aaggtgcatgcagacatgttaacactccaacgctcaagtcagtaatagaactgagaaagattgtgt--agaaaatgttgtgaaaagtgaatcatacattg 18323032  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    ||| |||||||| |||||||||||||    
T  18323033 aggatgaagcaaggtcacccttatat 18323058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 17698349 - 17698255
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||| ||||||||||||||| | ||||| ||||| |||||    
T  17698349 aagtcagtaatggaaccgagaaagagtgtgt--agaaagtgttgtgaaaagtgaattatactttgagggtgaagcaaggccacccatatataggcgc 17698255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 23497194 - 23497060
Alignment:
Q  89 aaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataa 188  Q
    ||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||||| |||||  ||||||||||  || || |||||||||  ||| | |    
T  23497194 aaagtgttgtgaatagtgaatcataccttgagggttaagcaaagtcacccttatataggcgctcgtgaagataattgtctccgggttttgc-acgtgtga 23497096  T
Q  189 ttagggaacggttagaggacacgtgtagagtgatcc 224  Q
    ||||||| |||||||||||||| || || |||||||    
T  23497095 ttagggagcggttagaggacacatgcagggtgatcc 23497060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 17927803 - 17927681
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||||| |||||||| |||| |||| ||||||||||||||||||||||||  ||  || |||||||||||||  |||| |||||| |||||||     
T  17927803 aaggtgcatgcatgcacgttagcactccaacgcttaagtcagtaatggaactgagattga--gtatgtagaaagtgttatgaaaggtgaatcatacctta 17927706  T
Q  119 agggtgaagcaaagtcacccttata 143  Q
    |||||||||||| | ||||||||||    
T  17927705 agggtgaagcaatgccacccttata 17927681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 13764981 - 13765175
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||||||||||||| ||| |||   | |||| ||||||| ||||||||||||||||  ||||||||||||| | ||||||||| ||  ||||    
T  13764981 aaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgt--gtagaaagtgttgtgtaaagtgaataatgtcttg 13765078  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatgtgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgta 215  Q
    | |||||||| |||||||||||| ||  ||||  ||||  |||||||| |  | |||||||||  | | |||| |||||||| |||| |||||||||    
T  13765079 aaggtgaagctaagtcacccttaaataagcgcgcgtgagaataaccgtcttcgagttttgcggtctgtgattaaggaacggtaagagaacacgtgta 13765175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 26916962 - 26916868
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||||||||||||||||||| |||||||||  ||||||||||| ||||||||| | ||||||||||  |||||||| ||| ||||||||| |||||    
T  26916962 aagtcagtaatggaactgagagagagtgtgt--agaaagtgttgtgaaaagtgagtcataccttgagcatgaagcaatgtcgcccttatataggcgc 26916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 5859815 - 5860010
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||| ||||||| |||| |||| || |||||| |||||||||| ||||| |||||||  |||  |||||  || ||||||||  |||||||||  ||||    
T  5859815 tgcagacacgttagcactccaacgctcaagtcaataatggaactaagaaatagtgtgttgaga--gtgttttgagaagtgaatcgtaccttgagattgaa 5859912  T
Q  127 gcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacggttagaggacacgtgtagagtgatcc 224  Q
    |||| ||||||||||||| |||||  | || | |||||||  ||||| ||||||||||  | ||||||| ||||||| | |||||||||||||||||||    
T  5859913 gcaaggtcacccttatataggcgcgcgttggaaataaccgcctctggattttgcggcgagtgattaggg-acggttaaatgacacgtgtagagtgatcc 5860010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 21416730 - 21416849
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||| || ||||| |||| | || || |||||||||||| ||||||||||||||||  ||||||||||||| ||||| |||||  ||||||     
T  21416730 aaggtgtctgcatgctcgttagcactccgacgctcaagtcagtaatgaaactgagaaagagtgt--gtagaaagtgttgtgaaaaatgaatcgtacctta 21416827  T
Q  119 agggtgaagcaaagtcaccctt 140  Q
    ||||||||||||  ||||||||    
T  21416828 agggtgaagcaagttcaccctt 21416849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 24507449 - 24507555
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||| ||||||||  ||| ||||  | |||||| |||||||| ||||||||||||| |  ||||||||||| ||||||||||| ||||||||    
T  24507449 aaggtgtctgcatgcacgttagtactccaacgatcaagtcaataatggaaatgagaaagagtgtct--agaaagtgttgtgaaaagtgaatcataccttg 24507546  T
Q  119 agggtgaag 127  Q
    |||||||||    
T  24507547 agggtgaag 24507555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 24070865 - 24070945
Alignment:
Q  40 acacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattat-accttgagg 121  Q
    ||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||| || |||||||| || |||||||||    
T  24070865 acactccaacacttaagtcagtaatggaactaagaaaga--gtgtgtagaaagtgttgtgagaagtgaatcataaccttgagg 24070945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 3459575 - 3459454
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgtt-gcgaaaagtgaattataccttgagggtga 125  Q
    ||||||||||||| |||| |  | || |||||||||||||||||||| ||||  |||||||||||||||| | ||||||| |||  |||||||| |||||    
T  3459575 tgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaaga--gtgtgtagaaagtgttggtgaaaagtaaatcgtaccttga-ggtga 3459479  T
Q  126 agcaaagtcacccttatattggcgc 150  Q
    |||||  |||||||||||| |||||    
T  3459478 agcaagttcacccttatataggcgc 3459454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 23269238 - 23269303
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgt 84  Q
    ||||||| | |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  23269238 aaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtgt 23269303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 1909807 - 1909741
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtg 85  Q
    |||||| |||||| ||||||| || |||||| || |||||||||||| |||||||||||||||||||    
T  1909807 aaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgtgtg 1909741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 15058027 - 15058150
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| |||||||||||||| |||| |||| |  |||| ||||||| || ||||||| | ||||  |||||||||| | ||||| | ||| ||||||||    
T  15058027 aaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaaaaatgtg--tagaaagtgtggtgaaaaataaatcataccttg 15058124  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    |||||||| ||| ||||| |||||||    
T  15058125 agggtgaaacaacgtcacacttatat 15058150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 24576674 - 24576559
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||||||||   || || ||||||||||||||||| | || ||  |||||||  |||||||| ||||||| |  | |||||||||||||||    
T  24576674 tgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatga--gtgtgtaagaagtgttgtgaaaagtaatgtgtaccttgagggtgaa 24576577  T
Q  127 gcaaagtcacccttatat 144  Q
    | ||  ||||||||||||    
T  24576576 ggaagttcacccttatat 24576559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 23269306 - 23269411
Alignment:
Q  101 aaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggttttgcggcgtataattagggaacgg 199  Q
    |||||||||  ||||||||||||||||||| ||||||| ||||| ||||| || ||| ||||||||| || | ||||||| |||| | | |||||| |||    
T  23269306 aaagtgaatcgtaccttgagggtgaagcaatgtcacccatatataggcgcgtgttgaggataaccgtctccgagttttgcagcgtgtgaatagggagcgg 23269405  T
Q  200 ttagag 205  Q
    | ||||    
T  23269406 tcagag 23269411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 17319665 - 17319600
Alignment:
Q  87 agaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgcat 152  Q
    |||||| |||| ||||||||||| || ||| |||||||||||||  ||||| |||||| |||||||    
T  17319665 agaaagagttgtgaaaagtgaatcatgcctcgagggtgaagcaagttcacctttatataggcgcat 17319600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 23963476 - 23963432
Alignment:
Q  99 gaaaagtgaattataccttgagggtgaagcaaagtcacccttata 143  Q
    ||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  23963476 gaaaagtgaatcatacgttgggggtgaagctaagtcacccttata 23963432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 26999202 - 26999246
Alignment:
Q  106 gaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    ||||| |||||||||||||| || ||||||||||||||| |||||    
T  26999202 gaattgtaccttgagggtgatgctaagtcacccttatataggcgc 26999246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 121078 - 120981
Alignment:
Q  51 cttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||| |||||||||  | |||||||||||||||||||| |||||||||||| |||||    
T  121078 cttaagtcagtaatggaactgagaaagagtgtgtata--aagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaaattcacccttatataggcgc 120981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 379719 - 379841
Alignment:
Q  30 aggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagca 129  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||||||  |||||||  |||||||| |||||||||  | ||||||||||||||||||    
T  379719 aggcacgttagcactttgacactgaagtcagtaatggaactgagaaaga--gtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagca 379816  T
Q  130 aagtcacccttatattggcgcatgt 154  Q
    |  |||||| ||||| |||||||||    
T  379817 agttcacccgtatataggcgcatgt 379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 6290 - 6445
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||||||||||| |||||| |  || ||||||||||||||||||||||| |  ||||||||||||||||| ||||||||| |  |||||||    
T  6290 aaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaatggaactgagaaata--gtgtgtagaaagtgttgtgaaaagtgagtcgtaccttg 6387  T
Q  119 agggtgaagcaaagtcacccttatattggcgcatg-tgaagataaccgtttctgggtt 175  Q
    || |||||||||  ||| |||||||| |||||| | |||| |||||||| || |||||    
T  6388 agcgtgaagcaagttcatccttatataggcgcacgttgaacataaccgtctccgggtt 6445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 68892 - 68778
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    |||||| ||||||| |||| |||| || |||| |||||||||||||||||||||| |    ||||||||||| ||||||||||| |||||||||||| ||    
T  68892 atgcagacacgttagcactccaacgctcaagttagtaatggaactgagaaagagtat----agaaagtgttgtgaaaagtgaatcataccttgagggaga 68797  T
Q  126 agcaaagtcacccttatat 144  Q
    ||||| |||||||||||||    
T  68796 agcaaggtcacccttatat 68778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 13949 - 14037
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||||| ||||||||||||||||  ||||||||||||| || |||||||| ||||||||||||||||||||  ||||||||||||    
T  13949 aagtcagtaatgaaactgagaaagagtgt--gtagaaagtgttgtgagaagtgaatcataccttgagggtgaagcaagatcacccttatat 14037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 15493 - 15406
Alignment:
Q  55 agtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||||||||||||||||||| | |  ||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||    
T  15493 agtcagtaatggaactgagaaagagtatct--agaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatat 15406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 8675 - 8571
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| ||||| ||||||| |||||| || || |||||||||||| |||||| ||| |||||||  ||||||||||| ||||||||||| |||||||     
T  8675 aaggtgtttgcag-cacgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgt--agaaagtgttgtgaaaagtgaatcatacctta 8579  T
Q  119 agggtgaa 126  Q
    ||||||||    
T  8578 agggtgaa 8571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 11014 - 10891
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||||||||||||||||| |||| |||| || |||||| ||||||||||  ||||||| |||||||  |||||||| |||||||||  | |||||||    
T  11014 aaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaact--gaaagagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttg 10917  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    |||||||| |||  ||||| ||||||    
T  10916 agggtgaaacaagttcacctttatat 10891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 22913 - 22999
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttat 142  Q
    |||||||||||||||||||||||  ||||||  |  |||||||| |||||||||  | |||||||||||||||||||  ||||||||||    
T  22913 aagtcagtaatggaactgagaaatcgtgtgt--aagaagtgttgtgaaaagtgacgtgtaccttgagggtgaagcaagttcacccttat 22999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 40795 - 40916
Alignment:
Q  26 atgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtga 125  Q
    |||||||||||||| |||| |||| || |||||||| ||||||||||  ||||| | |||||| |||||||  |||||||||  | ||||||||||||||    
T  40795 atgcaggcacgttagcactccaacgctcaagtcagtgatggaactga--aagagagagtgtaggaagtgttatgaaaagtgatgtgtaccttgagggtga 40892  T
Q  126 agcaaagtcacccttatattggcg 149  Q
    |||||  |||||||| ||| ||||    
T  40893 agcaagttcacccttttataggcg 40916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 7877 - 8000
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    |||||| ||| |||||||||| ||||  ||| || || ||||||||| || |||||||||||||  ||||||||||||| ||||||||||| |||  |||    
T  7877 aaggtgcatgtaggcacgttagcactctaacgctcaaatcagtaatgcaattgagaaagagtgt--gtagaaagtgttgtgaaaagtgaatcataatttg 7974  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    || ||||| ||| |||||| ||||||    
T  7975 agtgtgaaacaatgtcaccattatat 8000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 307 - 220
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtga-attataccttgagggtgaagcaaagtcacccttat 142  Q
    |||||||||||||||||||||||||||  |||||  |||||||| ||||||||| | | |||||||||||||||||||  ||||||||||    
T  307 aagtcagtaatggaactgagaaagagt--gtgtaagaagtgttgtgaaaagtgagaatgtaccttgagggtgaagcaagttcacccttat 220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 21705 - 21597
Alignment:
Q  31 ggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaa 130  Q
    ||||||||| |||| ||||||| ||||||||| || ||||||  ||||| |||| ||  |||||||| | |||||||  | |||||||||||||||||||    
T  21705 ggcacgttagcactccaacactcaagtcagtattgaaactga--aagagagtgtttaagaagtgttgtggaaagtgatgtgtaccttgagggtgaagcaa 21608  T
Q  131 agtcaccctta 141  Q
    | |||||||||    
T  21607 attcaccctta 21597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 35253 - 35353
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcg-aaaagtgaattataccttgagggtga 125  Q
    ||||||||||||| ||||   ||||| |||||||||| |||||||||||||||||||||  |||||||||| | |||||||||| || | ||||||| ||    
T  35253 tgcaggcacgttagcactctgacactcaagtcagtaacggaactgagaaagagtgtgtg--gaaagtgttgtgaaaaagtgaatcatcctttgaggggga 35350  T
Q  126 agc 128  Q
    |||    
T  35351 agc 35353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 215272 - 215387
Alignment:
Q  27 tgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaa 126  Q
    ||||||||||||| || | |||| || |||||||||||| ||||||  ||||| |||||||  |||||||| ||||||||   | |||||||||||||||    
T  215272 tgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactga--aagagagtgtgtaagaagtgttgtgaaaagtgttgtgtaccttgagggtgaa 215369  T
Q  127 gcaaagtcacccttatat 144  Q
    ||||  ||| ||||||||    
T  215370 gcaagttcatccttatat 215387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 4523 - 4400
Alignment:
Q  19 aaggtgtatgcaggcacgttaacacttcaacacttaagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttg 118  Q
    ||||||| |||| |||||||| |||| |||| || |||||| ||||| ||||||  ||||| | |||||  |||||||  ||||| |||  | |||||||    
T  4523 aaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactga--aagagagagtgtaagaagtgttatgaaaaatgatgtgtaccttg 4426  T
Q  119 agggtgaagcaaagtcacccttatat 144  Q
    ||||||||||||  ||||||||||||    
T  4425 agggtgaagcaagttcacccttatat 4400  T

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Target: scaffold0380 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 6924 - 6829
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgca 151  Q
    ||||||||| || ||||||||| ||||||||  |  |||||||| |||||||||  | ||||||||||||||| |||  |||||||| ||| ||||||    
T  6924 aagtcagtattgaaactgagaacgagtgtgt--aagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttgtataggcgca 6829  T

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Target: scaffold0263 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 20561 - 20467
Alignment:
Q  54 aagtcagtaatggaactgagaaagagtgtgtgtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaaagtcacccttatattggcgc 150  Q
    |||||| ||| ||||||||||||||||  ||||||||| ||||  |||||||||  | ||||||| |||||||  ||| |||||| ||||| |||||    
T  20561 aagtcactaaaggaactgagaaagagt--gtgtagaaaatgttatgaaaagtgatgtgtaccttgtgggtgaaataaattcacccatatataggcgc 20467  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 73837 - 73792
Alignment:
Q  85 gtagaaagtgttgcgaaaagtgaattataccttgagggtgaagcaa 130  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||||||||    
T  73837 gtagaaagtgttgtgaaaagtaaatcataccttcagggtgaagcaa 73792  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 149217 - 149261
Alignment:
Q  100 aaaagtgaattataccttgagggtgaagcaaagtcacccttatat 144  Q
    |||||||||| |||||||| ||||||||  |||||||||||||||    
T  149217 aaaagtgaatcataccttgggggtgaagttaagtcacccttatat 149261  T

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