View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591_low_12 (Length: 239)
Name: NF4591_low_12
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 17810109 - 17810274
Alignment:
| Q |
1 |
cataagagatttaacactgctgcatttctaagactgaattcgaacccaagacctctggttatgctggaagaaatgtcttatcatattattcaaactcact |
100 |
Q |
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| T |
17810109 |
catatgagatttaacactgttgtatttctaagactaaattcgaacccaagacctctggttatgctggaagaaatcttttatcatcttatccaaatgctct |
17810208 |
T |
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| Q |
101 |
tggataccaactcagctaattagtatatagttttagaaatatactatgcatttctttatttcttaa |
166 |
Q |
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| T |
17810209 |
tggatactaactcagctaattagtatataaagttagaaatatactatgcatttctttgtttcttaa |
17810274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 17810302 - 17810347
Alignment:
| Q |
162 |
cttaaagtaattgataattgaaaactttagcacaatcaaaaggtgt |
207 |
Q |
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| T |
17810302 |
cttaaagtaattgataattgaaaattttagcacaatcaaaaggtgt |
17810347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 3765326 - 3765259
Alignment:
| Q |
4 |
aagagatttaacactgctgcatttctaagactgaattcgaacccaagacctctggttatgctggaaga |
71 |
Q |
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| T |
3765326 |
aagagatttaacactgctgcattctcagggttgaattcgaacccaggacctctggttaagctggaaga |
3765259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 37568789 - 37568858
Alignment:
| Q |
3 |
taagagatttaacactgctgcatttctaagactgaattcgaacccaagacctctggttatgctggaagaaa |
73 |
Q |
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| T |
37568789 |
taagagttttaacactgctgcatgcctaaggctggattcgaacccaggacct-tggttaagctagaagaaa |
37568858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 25084113 - 25084064
Alignment:
| Q |
3 |
taagagatttaacactgctgcatttctaagactgaattcgaacccaagac |
52 |
Q |
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| T |
25084113 |
taagagttttaacattgctgcatgtccaagactgaattcgaactcaagac |
25084064 |
T |
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