View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4591_low_7 (Length: 349)
Name: NF4591_low_7
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4591_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 1729878 - 1729568
Alignment:
| Q |
17 |
atgaatgattcacttacagggggtttattgagaagtgaactaaaccaaaggggtttaactactaattagttatgtcgtagagtctacaacaatattgaga |
116 |
Q |
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| T |
1729878 |
atgaatgattcacttacagggggtttattgagaagtgaactaaaccaaaggggtttaactactaattagttatgtcgtagagtctacaacaatattgaga |
1729779 |
T |
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| Q |
117 |
aagttagttaccatatccttatggattgtcattatgcacgaaaaatctggtttggatcaaacttaaacatacaattttcagatagcatagcccttcattt |
216 |
Q |
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| T |
1729778 |
aagttagttaccatatccttatggattgtcattatgcaagaaaaatctggtttggatcaaacttaaacattcaattttcagatagcatagcccttcattt |
1729679 |
T |
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| Q |
217 |
atcatttaaattagtgcactgtgtttggatttaataaagttcaataattcatagttgttgatagtaacttgtattgaaaattagctttaaaagttagtta |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1729678 |
atcatttaaattagtgcgctgtgtttggatttaataaagttcaataattcatagttgttgatagtaacttggattgaaaattagctttaaaagttagtta |
1729579 |
T |
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| Q |
317 |
ctttgttgtga |
327 |
Q |
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||||||||||| |
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| T |
1729578 |
ctttgttgtga |
1729568 |
T |
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