View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4591_low_9 (Length: 278)

Name: NF4591_low_9
Description: NF4591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4591_low_9
NF4591_low_9
[»] chr2 (5 HSPs)
chr2 (7-66)||(32603918-32603977)
chr2 (35-115)||(32600395-32600477)
chr2 (219-265)||(32600214-32600260)
chr2 (135-174)||(32600335-32600374)
chr2 (141-175)||(32603818-32603852)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 32603977 - 32603918
Alignment:
Q  7 taatccaagtataatatccacttcgttcagtgataaaagaagcaaaaaccaagcttcaat 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32603977 taatccaagtataatatccacttcgttcagtgataaaagaagcaaaaaccaagcatcaat 32603918  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 32600477 - 32600395
Alignment:
Q  35 agtgataaaagaagcaaaaaccaagcttcaattat--tattttnnnnnnnggtcattctcgtctcgtactacattcataagac 115  Q
    |||||||||||||||||||||||||||||||||||  ||||||       |||||||||||||||||||||||||||||||||    
T  32600477 agtgataaaagaagcaaaaaccaagcttcaattatattattttaagaaaaggtcattctcgtctcgtactacattcataagac 32600395  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 32600260 - 32600214
Alignment:
Q  219 attgcgtttttatgtgtatatttgcttacttatactacagctactcc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32600260 attgcgtttttatgtgtatatttgcttacttatactacagctactcc 32600214  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 32600374 - 32600335
Alignment:
Q  135 caaaattacaactatatgatcaataactaactttatgcaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  32600374 caaaattacaactatatgatcaataactaactttatgcaa 32600335  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 32603852 - 32603818
Alignment:
Q  141 tacaactatatgatcaataactaactttatgcaac 175  Q
    |||||||||||||||||| ||||||||||||||||    
T  32603852 tacaactatatgatcaatgactaactttatgcaac 32603818  T

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