View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592-Insertion-10 (Length: 176)
Name: NF4592-Insertion-10
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 1e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 41658322 - 41658236
Alignment:
| Q |
8 |
tccatgagtacacaaaaggttagtagattcagaaattaggttagtgtaccaatttggttgtactaaactacgtcaagtctttagtgt |
94 |
Q |
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| T |
41658322 |
tccatgagtacacaaaaggttagtagattcagaaattaggttagtgtgccaatttggttgtactaaactacgtcaagtctttagtgt |
41658236 |
T |
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Target: chr1; HSP #2
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 41658170 - 41658091
Alignment:
| Q |
97 |
acatccttaaaaatagaaccggacactgttgacaattgaaccgagtcattatttgtaggaaattctgaagcatatgatgc |
176 |
Q |
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| T |
41658170 |
acatccttaaaaatagaaccggacactgttgacaattgaaccgagtcattatttgtaggaaattctgaagcatatgatgc |
41658091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 41659285 - 41659228
Alignment:
| Q |
21 |
aaaaggttagtagattcagaaattaggttagtgtaccaatttggttgtactaaactac |
78 |
Q |
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| T |
41659285 |
aaaaggttagtagttttagaatttaggttagtgtaccaatttggttttactaaactac |
41659228 |
T |
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