View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592-Insertion-4 (Length: 760)
Name: NF4592-Insertion-4
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592-Insertion-4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 270 - 760
Target Start/End: Complemental strand, 7501084 - 7500594
Alignment:
| Q |
270 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
369 |
Q |
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| T |
7501084 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
7500985 |
T |
|
| Q |
370 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggttttgtgcctcttgtacnnnnnnnnnnnnnnnnnaaggagtacctcttgtac |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |
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| T |
7500984 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggtttagtgcctcttgtatttattttttatttttttagggagtacctcttgtac |
7500885 |
T |
|
| Q |
470 |
tcattctcatctttctattttaataaatattcatttgctgcttaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500884 |
tcattctcatctttctattttaataaatattcatttgctgctaaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
7500785 |
T |
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| Q |
570 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaatt |
669 |
Q |
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| T |
7500784 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaatt |
7500685 |
T |
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| Q |
670 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttcc |
760 |
Q |
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| T |
7500684 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttcc |
7500594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 7509182 - 7509053
Alignment:
| Q |
11 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaattccacatcagtaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagaggttgacaaattccaaatcagtaa |
7509083 |
T |
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| Q |
111 |
attgcaaaggaagaagaataggaaaaggaa |
140 |
Q |
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| T |
7509082 |
tttgcaaaggaagaagaataggaaaaggaa |
7509053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 7501196 - 7501155
Alignment:
| Q |
160 |
tcctaagtgttctttctataatgtatcctaaatttattattt |
201 |
Q |
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| T |
7501196 |
tcctaagtgttctttctataatgtgtcctaaatttattattt |
7501155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 570
Target Start/End: Original strand, 8057200 - 8057240
Alignment:
| Q |
530 |
cccatcatgaataatttcagtaggttagatccagacatcat |
570 |
Q |
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| T |
8057200 |
cccatcatgaataatttcagtaggttatgtccagacatcat |
8057240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 759
Target Start/End: Complemental strand, 7502118 - 7502028
Alignment:
| Q |
669 |
tatggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttc |
759 |
Q |
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| T |
7502118 |
tatggcggaatatttgcacctcaaagtggccttcccttatggatccaatcgttaacgatgtcatctccactttccccggtggttacagttc |
7502028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
11 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
77 |
Q |
| |
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|||| ||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 27249111 - 27249183
Alignment:
| Q |
24 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaat |
97 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgattaacccaag-aagagtttgtcaaat |
27249183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 545 - 701
Target Start/End: Original strand, 27240723 - 27240882
Alignment:
| Q |
545 |
ttcagtaggttagatccagacatcatccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgcc |
644 |
Q |
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|||||||||||||||||||||||||| || ||| | |||||||| |||||||| || || ||||||| | || | || ||||||||| || || || | |
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| T |
27240723 |
ttcagtaggttagatccagacatcatgcatacccacatccttccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtc |
27240822 |
T |
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| Q |
645 |
acttgatctg---caacaacgaggaattatggcggaacatttgcacctccatgtggcctt |
701 |
Q |
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|| |||| || ||||||||| || ||||||||||||| |||||||| | |||||||| |
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| T |
27240823 |
acatgatttgccacaacaacgaagatctatggcggaacatatgcacctcaaagtggcctt |
27240882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 687
Target Start/End: Original strand, 27253110 - 27253177
Alignment:
| Q |
620 |
tcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac |
687 |
Q |
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| T |
27253110 |
tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac |
27253177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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