View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592-Insertion-5 (Length: 670)
Name: NF4592-Insertion-5
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 34 - 670
Target Start/End: Original strand, 49040886 - 49041517
Alignment:
| Q |
34 |
attaatgacgtactaactcacaagccacaagtgctaataaaataatacacctttttt--ctcgttacattgaattaataacaacaagaaaaggtaacaat |
131 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |
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| T |
49040886 |
attaatgatgtactaactcacaagtcacaagtgctaataaaataatacaccttttttttctcgttacattgaattaataacaacaagaaaa--tagc--- |
49040980 |
T |
|
| Q |
132 |
cttgctttacaaatttt-aagaagcaacagaaactgggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgac |
230 |
Q |
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| |||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49040981 |
---gttttagaaatttttaagaagcaacagaaacagggacactaacgggatacttatgaacagagtcatcccaggggttgccccgccaatccccaacgac |
49041077 |
T |
|
| Q |
231 |
gggcaagtcgcgcacggccctccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgcccttt |
330 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49041078 |
gggcaagtcacgcacggccttccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaacccggcccttt |
49041177 |
T |
|
| Q |
331 |
gcctcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagtt |
430 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041178 |
gcctcagtataagccagttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagtt |
49041277 |
T |
|
| Q |
431 |
gaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacc |
530 |
Q |
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| T |
49041278 |
gaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacc |
49041377 |
T |
|
| Q |
531 |
tgaacctttcagcaacttccttctaaccaaagaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttatgtttgttttc |
630 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49041378 |
tgaacctttcagcaacttccttctaaccaaagaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttatgtttgttttc |
49041477 |
T |
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| Q |
631 |
aaagcatctcctgcaacagccattaattctctagccaatg |
670 |
Q |
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| T |
49041478 |
aaagcatctcctgcaacagccattaattctctagccaatg |
49041517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 508
Target Start/End: Complemental strand, 49040320 - 49040059
Alignment:
| Q |
247 |
gccctccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagcca |
346 |
Q |
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|||||||| ||||| |||||||| |||||||| | |||||||||||||||||| |||| |||||| |||| ||| || ||||| ||||| || || | |
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| T |
49040320 |
gccctccatacggcactgttacatttaaaacctgccccaaatgcaatctgccacaccctatccccctttgaaactctacccttggcctctacgtatgcta |
49040221 |
T |
|
| Q |
347 |
gttcataccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaa |
446 |
Q |
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| T |
49040220 |
actcataccaaagtgaactacttgaagtgttaccaaagcgatgtaatgtggaacaagatggctccatatgccactcacttagttctatattattctgcat |
49040121 |
T |
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| Q |
447 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaat |
508 |
Q |
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|||| | || | ||| ||||| ||||| || |||||||| |||||||| |||||||||| |
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| T |
49040120 |
agcatccaacactgatctcccacctgcatggatgcagaaatgctcaaaagccaatttgaaat |
49040059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 31333916 - 31333842
Alignment:
| Q |
447 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
521 |
Q |
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| T |
31333916 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataagg |
31333842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 265 - 509
Target Start/End: Complemental strand, 15239692 - 15239448
Alignment:
| Q |
265 |
ttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttcataccatagagaac |
364 |
Q |
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|||||||||||||| || ||||||||||| ||||| | ||| |||||| || ||| || || || ||||||||||||| ||||||||| | |||| |
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| T |
15239692 |
ttacacttaaaaccagaaccaaatgcaatttgccaagttctatcaccttttttaatcctccctttagcttcagtataagccaattcataccacaatgaac |
15239593 |
T |
|
| Q |
365 |
tgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcatcaagaacagctct |
464 |
Q |
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| || |||||||| |||||||||| ||| ||||||| || |||||||||||||| ||||| | | |||||| |||| ||||||||| | ||||||||| |
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| T |
15239592 |
tactagaagtgttaccaaatctattcagtgtcatccttgatggttccatatgccaatcacttaaatcaagatttttctccaactcatccaaaacagctct |
15239493 |
T |
|
| Q |
465 |
tccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
509 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
15239492 |
tccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
15239448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 252 - 509
Target Start/End: Complemental strand, 34053404 - 34053147
Alignment:
| Q |
252 |
ccacacggcgctgttacacttaaaacccgacccaaatgcaatctgccagacccgatccccttttgcaaccctgccctttgcctcagtataagccagttca |
351 |
Q |
| |
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|||||| || |||||||| ||||| || || ||||||||||| ||||| || ||| |||||| || ||| || || || ||||||||||||| |||| |
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| T |
34053404 |
ccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaagtcctatcaccttttctaatcctccctttagcttcagtataagccaattca |
34053305 |
T |
|
| Q |
352 |
taccatagagaactgcttgaagtgtttccaaatctatgcagagtcatccgagacggttccatatgccactcactgagttgaagattcttctgcaactcat |
451 |
Q |
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||||||| ||||| || ||||| || |||||||||| || ||||| | || |||||||||||||| ||||| || | |||||| |||| || |||| |
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| T |
34053304 |
taccataatgaactactagaagtattaccaaatctatttagtgtcattcttgatggttccatatgccaatcactaaggtcaagatttttctctaattcat |
34053205 |
T |
|
| Q |
452 |
caagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
509 |
Q |
| |
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| | ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |
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| T |
34053204 |
ccaaaacagctcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
34053147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 50087288 - 50087384
Alignment:
| Q |
429 |
ttgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
525 |
Q |
| |
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| T |
50087288 |
ttgaagattcttttgtaactcatcaatcacagcacgaccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
50087384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 23499272 - 23499346
Alignment:
| Q |
447 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
521 |
Q |
| |
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|||||| | ||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
23499272 |
ctcatctaaaacagctcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatctggaatataagg |
23499346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 526
Target Start/End: Original strand, 23271550 - 23271646
Alignment:
| Q |
430 |
tgaagattcttctgcaactcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttca |
526 |
Q |
| |
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|||||||||||||| |||||||| | || || | |||||||||||||||||| ||||| ||||| ||| ||||||||| || |||||||| |||| |
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| T |
23271550 |
tgaagattcttctgtaactcatcgatcacggcacgtccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttca |
23271646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 521
Target Start/End: Complemental strand, 26453392 - 26453318
Alignment:
| Q |
447 |
ctcatcaagaacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
521 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||| ||||| |||||||| | || ||||| ||||||||||| |
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| T |
26453392 |
ctcatcaatcacagctctaccaccagcatgaatacaaaaatgctcaaaagcaagcttaaaatcaggtatataagg |
26453318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 524
Target Start/End: Complemental strand, 46572703 - 46572635
Alignment:
| Q |
456 |
aacagctcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggttt |
524 |
Q |
| |
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||||||||| || || ||||| || || |||||||||||||||| |||||||| || ||||||||||| |
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| T |
46572703 |
aacagctctacctccggcatggatgcaaaaatgttcaaaagctagcttgaaatcaggaatataaggttt |
46572635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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