View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4592-Insertion-7 (Length: 396)

Name: NF4592-Insertion-7
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4592-Insertion-7
NF4592-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-396)||(44459261-44459649)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 44459649 - 44459261
Alignment:
Q  8 ctttgaaggatgggcttgatcctttggagcgacaagtaagggaagtttttcatagaattgtgcgcagcaaaacagaagggcttgattctcttggtaggcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459649 ctttgaaggatgggcttgatcctttggagcgacaagtaagggaagtttttcatagaattgtgcgcagcaaaacagaagggcttgattctcttggtaggcc 44459550  T
Q  108 aaacaatgagtaacttgtgatgaaatttagaatttgtgataacattatagtttgattttgctttcatagaaataggaaaactacaaaaggtgcaaaggat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459549 aaacaatgagtaacttgtgatgaaatttagaatttgtgataacattatagtttgattttgctttcatagaaataggaaaactacaaaaggtgcaaaggat 44459450  T
Q  208 tgtatatggagattgttgattttagtaagtttatttcaagagttaagttaagtggtaagggggaggattcttgtacttaaaaaaccatgtgaaatattat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459449 tgtatatggagattgttgattttagtaagtttatttcaagagttaagttaagtggtaagggggaggattcttgtacttaaaaaaccatgtgaaatattat 44459350  T
Q  308 ttgcttttcccccttttagtttttgtcttgagattttgctttgtataatcaatctcctctttaacttgctgcatcctcattgtagttga 396  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459349 ttgcttttcccccctttagtttttatcttgagattttgctttgtataatcaatctcctctttaacttgctgcatcctcattgtagttga 44459261  T

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