View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592-Insertion-9 (Length: 284)
Name: NF4592-Insertion-9
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592-Insertion-9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 103 - 284
Target Start/End: Original strand, 19608957 - 19609143
Alignment:
| Q |
103 |
catgatataggtggggcagaaagctgaaatagaaaatatat-----tgtgcaattaacaaataaactaatattcttatttatttttcttgcattttcgtg |
197 |
Q |
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| T |
19608957 |
catgatataggtggggcagaaagctgaaatagaaaatatataaggttgtgcaattaacaaataaactaatattcttatttatttttcttgcattttcgtg |
19609056 |
T |
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| Q |
198 |
cacaagcaaataaagtggcctttgcgggaatcaaaggtgcacaagtaaatatagctcccaaaagttgctccaaaagattttcacatc |
284 |
Q |
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| T |
19609057 |
cacaagcaaatatagtgacctttgcgggaatcaaaggtgcacaagtaaatatagcttccaaaagttgctccaaaagattttcacatc |
19609143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 19611565 - 19611737
Alignment:
| Q |
109 |
ataggtggggcagaaagctgaaatagaaaatatattg----tgcaattaacaaataaactaatatt-----cttatttatttttcttgcattttcgtgca |
199 |
Q |
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| T |
19611565 |
ataggtggagcagaaagctgaaatagaaaatatatagggggtgcaattaacaaacaagctagtattattttcttatttgtttttcttgcattttggtgca |
19611664 |
T |
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| Q |
200 |
caagcaaataaagtggcctttgcgggaatcaaaggtgcacaagtaaatatagctcccaaaagttgctccaaaa |
272 |
Q |
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| T |
19611665 |
caagcaaatatagtgacctgtgtgggaatcaaaggttcacaagtaaatatagcttcgaaaagttgctccaaaa |
19611737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 19608861 - 19608889
Alignment:
| Q |
7 |
actagatgatgtacatatcatataaaggg |
35 |
Q |
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| T |
19608861 |
actagatgatgtacatatcatataaaggg |
19608889 |
T |
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