View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4592_high_2 (Length: 435)

Name: NF4592_high_2
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4592_high_2
NF4592_high_2
[»] chr7 (1 HSPs)
chr7 (1-419)||(699858-700276)
[»] chr3 (1 HSPs)
chr3 (4-419)||(23261850-23262265)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 700276 - 699858
Alignment:
Q  1 aagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  700276 aagcaagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaa 700177  T
Q  101 atgctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttc 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  700176 atgctccatattttccatcaggcaaaacccatgcatttgtttgaccatacatagtctcgggtctcaacgtcgcagcagcaagaaaaaccttctttccttc 700077  T
Q  201 aagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  700076 aagagccttaaatttatcaggaaaaggcgataccaactccatcttgataatcatatactcttgaggctgaacaccttcaccactagccctatcatgatca 699977  T
Q  301 gcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  699976 gcacacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacgaaag 699877  T
Q  401 aatcaaaataagggttcat 419  Q
    |||||||||||||||||||    
T  699876 aatcaaaataagggttcat 699858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 419
Target Start/End: Original strand, 23261850 - 23262265
Alignment:
Q  4 caagtgggttcctgaggtactcttgagtggttctggtaagcaaggttaagtgctgctctatgtgtaagaacaaagacctcagtttcagtgatttcaaatg 103  Q
    ||||| |||| ||||||||| || ||||| || ||||||||||| ||||| ||||| ||||| |  | |||||| ||||| |||||| | || ||||| |    
T  23261850 caagtcggtttctgaggtaccctagagtgattttggtaagcaagattaagcgctgccctatgcgctacaacaaacacctccgtttcattaatctcaaaag 23261949  T
Q  104 ctccatattttccatcaggcaaaatccatgcatttgtttgaccatacatagtctcgggtctcaacatcgcagcagcaagaaaaaccttctttccttcaag 203  Q
    | |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| || |     
T  23261950 ccccatatttcccatcaggcaacacccaagcatttgtttgaccatacatagtctcaggcctcaacgtcgccgcagcaagaaaaaccttctttccctccaa 23262049  T
Q  204 agccttaaatttatcaggaaaaggcgataccaactccatcttgataatcgtatactcttgaggctgaacaccttcaccactagccctatcatgatcagca 303  Q
    | ||||||| || ||||||||||| || |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  23262050 aaccttaaacttctcaggaaaaggagaaaccacctccatcttaataatcgtatactcttgcggctgaacaccttcaccactagccctatcatgatccgca 23262149  T
Q  304 cacggttgtccatccaaaggcgaaaaaattgtatacctaacatctttaacaaccttccccaatgacttcaatttcctcatttgccacctaacaaaagaat 403  Q
    || || ||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||  | | |||||| |||||||| |||||||||||||||| ||    
T  23262150 caaggctgtccatccaatggcgaaaaaactgtatacctaacatccttaacaaccttaccagacgccttcaacttcctcatatgccacctaacaaaagcat 23262249  T
Q  404 caaaataagggttcat 419  Q
    |||||||||| |||||    
T  23262250 caaaataaggattcat 23262265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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