View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592_high_3 (Length: 341)
Name: NF4592_high_3
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 44560298 - 44559974
Alignment:
| Q |
17 |
aaatactaatcctatcatgttaaactgctaacagaaagaggagaaaaaagaccagctcgttgagaaatagtaatgggagattatattgaagatgatacgg |
116 |
Q |
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| T |
44560298 |
aaatactaatcctatcatgttaaactgctaacagaaagaggagaaaaaagaccagctcgttgagaaatagtaatgggagattatattgaagatgatacgg |
44560199 |
T |
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| Q |
117 |
agctaaaggatacgatgactaacttctataaagatagtttactgagagtagagatgatgataatgttgtgtttgaaggaaataggtttcgaaaaccaagt |
216 |
Q |
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| T |
44560198 |
agctaaaggatacggtgactaacttctataaagatagtttactgagagtagagatgatgataatgttgtgtttgaaggaaataggtttcgaaaaccaagt |
44560099 |
T |
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| Q |
217 |
ccctttgattggtagagctccgcgctagagtgactacgataatttgattgataaagtaaagtccaaactttcgggttagaaggctaagagtttccttggc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44560098 |
ccctttgattggtagagctccgcgctagagtgactacggtaatttgattgataaagtaaagtcgaaactttcgggttagaaggctaagagtttccttggc |
44559999 |
T |
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| Q |
317 |
cccggtagaagccttcatacaatga |
341 |
Q |
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| T |
44559998 |
cccggtagaagccttcatacaatga |
44559974 |
T |
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