View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4592_low_4 (Length: 315)

Name: NF4592_low_4
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4592_low_4
NF4592_low_4
[»] chr8 (1 HSPs)
chr8 (16-315)||(44559611-44559910)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 44559611 - 44559910
Alignment:
Q  16 tctcacatctacaccatcaaaatattcaccttccaattgccatctccataccgaccaaatcagagattatccattttctaatgtcatcgtgaacttgcac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  44559611 tctcacatctacaccatcaaaatattcaccttccaattgccatctccatatcgaccaaatcagagactatccattttctcatgtcatcgtgaacttgcac 44559710  T
Q  116 catgcaatcagctaaaataatgttgccacctgtcatttgtgatttgttttctccagacattaactgatcgcacatcaccgactcagaatgactaatacta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44559711 catgcaatcagctaaaataatgttgccacctgtcatttgtgatttgttttctccaaacattaactgatcgcacatcaccgactcagaatgactaatacta 44559810  T
Q  216 gtccaagtgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44559811 gtccaagtgctaaccattactttgcaaataaataatctgagggtttagcaacaatgcctctcctcaagtatccctcggctatattttcccttcaaaacac 44559910  T

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