View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4592_low_5 (Length: 312)

Name: NF4592_low_5
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4592_low_5
NF4592_low_5
[»] chr2 (15 HSPs)
chr2 (9-208)||(11110374-11110577)
chr2 (202-296)||(11110211-11110305)
chr2 (9-139)||(11118397-11118527)
chr2 (210-292)||(10793990-10794072)
chr2 (210-292)||(11118219-11118301)
chr2 (9-113)||(10793748-10793852)
chr2 (50-104)||(11097401-11097455)
chr2 (215-268)||(11104244-11104297)
chr2 (52-113)||(11178531-11178592)
chr2 (50-106)||(11145573-11145629)
chr2 (210-289)||(11145369-11145448)
chr2 (209-292)||(11177297-11177380)
chr2 (215-293)||(11171290-11171368)
chr2 (248-293)||(11137066-11137111)
chr2 (46-106)||(11172386-11172446)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 9 - 208
Target Start/End: Complemental strand, 11110577 - 11110374
Alignment:
Q  9 agcaaaggcagatttaagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110577 agcaaaggcagatttaagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagt 11110478  T
Q  109 ggaacctcccaacctggacccccagtctgtggaaatagattgattgtattattttaagatcatacaatgaata-----aaagaagtaataatattcttaa 203  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| ||||    
T  11110477 ggaacctcccaacctggacccccagtctgtgtaaatagattgattgtattattttaagatcatacaatgaataaaattaaagaagtaataatatt-ttaa 11110379  T
Q  204 ctaat 208  Q
    |||||    
T  11110378 ctaat 11110374  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 11110305 - 11110211
Alignment:
Q  202 aactaataatatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccacttta 296  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110305 aactaaaaatatgtaccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccacttta 11110211  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 11118527 - 11118397
Alignment:
Q  9 agcaaaggcagatttaagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagt 108  Q
    |||||||| |||||||||| ||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| | |    
T  11118527 agcaaaggaagatttaagttgatctagactggagctgggacctggaagatttctattggcaagggattgatttgctgttagactatcccttcttcccaat 11118428  T
Q  109 ggaacctcccaacctggacccccagtctgtg 139  Q
    |||||   |||||||||||||||| ||||||    
T  11118427 ggaacgatccaacctggacccccactctgtg 11118397  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 10793990 - 10794072
Alignment:
Q  210 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccac 292  Q
    ||||||||||| |  |||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  10793990 atatgtaccaggacggaagatattctagcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccac 10794072  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 11118301 - 11118219
Alignment:
Q  210 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccac 292  Q
    |||| ||||||||  ||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||    
T  11118301 atatttaccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccac 11118219  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 10793748 - 10793852
Alignment:
Q  9 agcaaaggcagatttaagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagt 108  Q
    |||||||| |||||||||| ||  |||| |||||   ||  |||||||||||||||| || |||| | |||||||||||||||||||||||||||| | |    
T  10793748 agcaaaggaagatttaagttgacttagattgaagaaaggggctggaagattttgatttgcgagggttcgatttgctgttagactatcccttcttcccaat 10793847  T
Q  109 ggaac 113  Q
    |||||    
T  10793848 ggaac 10793852  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 11097455 - 11097401
Alignment:
Q  50 ctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcc 104  Q
    ||||||| |||||||| ||||||| ||| |||||||||| |||||||||||||||    
T  11097455 ctggaaggttttgatttgcaagggcttggtttgctgttaaactatcccttcttcc 11097401  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 11104297 - 11104244
Alignment:
Q  215 taccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaac 268  Q
    ||||||||||||||||| | |||| ||||  |||||||||||||||||||||||    
T  11104297 taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaac 11104244  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 11178592 - 11178531
Alignment:
Q  52 ggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac 113  Q
    ||||||||||||   |||||||| | ||||||||||| ||||||||||||||||| ||||||    
T  11178592 ggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaac 11178531  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 11145629 - 11145573
Alignment:
Q  50 ctggaagattttgattggcaagggattgatttgctgttagactatcccttcttccta 106  Q
    |||||||||||||||| ||||| ||||| |||||||||| || ||| ||||||||||    
T  11145629 ctggaagattttgattagcaagtgattggtttgctgttaaaccatctcttcttccta 11145573  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 11145448 - 11145369
Alignment:
Q  210 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttc 289  Q
    |||| ||||||  |||| |||| | |||| ||||| | |||||||||||||||||||||| | ||||||||||| |||||    
T  11145448 atatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttc 11145369  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 11177380 - 11177297
Alignment:
Q  209 aatatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccac 292  Q
    ||||| |||||||  |||||||||| |||| | ||| | |||||||||||||||||||||  | ||||| ||||| ||||||||    
T  11177380 aatatataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggacaagcattttccac 11177297  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 11171368 - 11171290
Alignment:
Q  215 taccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccact 293  Q
    |||||||| ||| || ||| |||| ||||| | |||||||||||||||||||||  | ||||| ||||| |||||||||    
T  11171368 taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccact 11171290  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 11137111 - 11137066
Alignment:
Q  248 aagaatatcagcacaagaaactctattagggcaagctttttccact 293  Q
    |||||||||||||||||||||| | ||||| ||||| |||||||||    
T  11137111 aagaatatcagcacaagaaactgtgttaggacaagccttttccact 11137066  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 11172446 - 11172386
Alignment:
Q  46 ggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttccta 106  Q
    |||| ||||||||||  ||| ||||||| | |||||||||||| |||||| ||||||||||    
T  11172446 ggacttggaagatttatattagcaagggttagatttgctgttaaactatctcttcttccta 11172386  T

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