View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4592_low_8 (Length: 245)
Name: NF4592_low_8
Description: NF4592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4592_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 96 - 234
Target Start/End: Original strand, 7286689 - 7286827
Alignment:
| Q |
96 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttgtacttcttcattcttgattacctttcg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
7286689 |
ttgaacacctcaatttcggtctctatttgcagaccttatgcacattttcttaaatttttataattcaattttctacttcttcgttcttgattacctttcg |
7286788 |
T |
|
| Q |
196 |
agatatttgtggatatttttgaagtttcaatatattcat |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7286789 |
agatatttgtggatatttttgaagtttcaatatattcat |
7286827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7286431 - 7286488
Alignment:
| Q |
1 |
tatatacaaaggaaggcaagctaaaattaaccaagagtaaatataaaaactggaaaga |
58 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7286431 |
tatatacaaaggagggcaagctaaaattaaccaagagtcaatataaaaactggaaaga |
7286488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 8357411 - 8357372
Alignment:
| Q |
195 |
gagatatttgtggatatttttgaagtttcaatatattcat |
234 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||| |
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| T |
8357411 |
gagagatttgtggatatttttgcagtttcaatatattcat |
8357372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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