View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4593-Insertion-2 (Length: 177)
Name: NF4593-Insertion-2
Description: NF4593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4593-Insertion-2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 154; Significance: 6e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 3139125 - 3138957
Alignment:
| Q |
8 |
ctttgatcccaacttccaaatctcctttcttcccttaacaacacaacagttggtactttcttgtattctcctctgcttgcttgttttttatcttctcatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
3139125 |
ctttgatcccaacttccaaatctcctttcttcccttaacaacacaacagttgctactttcttgtattctcctctgcttgcttgt-ttttatcttatcatg |
3139027 |
T |
|
| Q |
108 |
gccggtcgttacgacagtaaccccttcgacgaagaacaagtcaaccccttttctgtaagtacctcttttc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3139026 |
gccggtcgttacgacagtaaccccttcgacgaagaacaagtcaaccccttttctgtaagtacctcttttc |
3138957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University