View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4593_high_1 (Length: 406)
Name: NF4593_high_1
Description: NF4593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4593_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 31 - 388
Target Start/End: Complemental strand, 15164781 - 15164423
Alignment:
| Q |
31 |
aaaagaaacaagagatggaaaagaatgttgatgtacgtgagagagtaagcatggatgttgaagaagaagtagtggtagacgataaaaagaggaagtataa |
130 |
Q |
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| T |
15164781 |
aaaagaaacaagagatggaaaagaatgttgatgtaggtgagagagtaagcatggatgttgaagaagaagtagtggtagacgataaaaagaggaagtataa |
15164682 |
T |
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| Q |
131 |
tgaagatggaaatatgaagaaagatggaacgaataagcatggcataaagaatgacactacaagcacaccactacaacatacattgcttggtcccgaaacg |
230 |
Q |
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| T |
15164681 |
tgaagatggaaatatgaagaaagatggaacgaataagcatggcataaagaatgacactacaagcaccccactacaacatacattgcttggtcccgaaacg |
15164582 |
T |
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| Q |
231 |
caacatagcaaggggaaggatggaggaaacggtaacgatactc-nnnnnnnnatcgaagggtcctaatatcaggccttctgggaaaaatgactatcataa |
329 |
Q |
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| T |
15164581 |
caacatagcaaggggaaggatggaggaaacggtaacgatactcattttttttatcgaagggtcctaatatcaggccttctgggaaaaatgactatcataa |
15164482 |
T |
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| Q |
330 |
gctggagctttcggggtttgggtaactcgagtgtagttccaactatccgggacctattt |
388 |
Q |
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| T |
15164481 |
gctggagcttcccgggtttgggtaactcgagtgcagttccaactatccgggacctattt |
15164423 |
T |
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