View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4593_low_2 (Length: 260)
Name: NF4593_low_2
Description: NF4593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4593_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 9160468 - 9160238
Alignment:
| Q |
11 |
gtgagaagaagttcggaattattaggtggagcctttgatttatccaaagtttctgattctaaaattgccattgaattaggaagaataagtggaaggtatc |
110 |
Q |
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| T |
9160468 |
gtgaaaagaagttcagtattattaggtggagcctttgatttatccaaagtttctgattctaaaattgccattgaattaggaagaataagtggaaggtatc |
9160369 |
T |
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| Q |
111 |
tcttgccatcatttataatgagatttatgcttggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaa |
210 |
Q |
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| T |
9160368 |
tcttgccatcatttataatgagatttatgctaggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaa |
9160269 |
T |
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| Q |
211 |
tattgaagtttttcttcgtggaagtaccttg |
241 |
Q |
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| T |
9160268 |
tattgaagtttttcttcgtggaagtaccttg |
9160238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 9317529 - 9317751
Alignment:
| Q |
19 |
aagttcggaattattaggtggagcctttgatttatccaa---agtttctgattctaaaattgccattgaattaggaagaataagtggaaggtatctcttg |
115 |
Q |
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| T |
9317529 |
aagttcagaattagcaggtggagaatttgatttatccaacaaagtttctgattccaaaattgccattaaattaggaagaataagtggaaggtatatcttg |
9317628 |
T |
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| Q |
116 |
ccatcatttataatgagatttatgcttggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaatattg |
215 |
Q |
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| T |
9317629 |
ccatcattggtaatgagatttacgacgggccttgtagttttctttgtgctattgatatatacatgtcgaagaaaacatgcctcaatttacgaaaatattg |
9317728 |
T |
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| Q |
216 |
aagtttttcttcgtggaagtacc |
238 |
Q |
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| T |
9317729 |
aagtttttcttcgtggaagtacc |
9317751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 9348497 - 9348616
Alignment:
| Q |
55 |
caaagtttctgattctaaaattgccattgaattaggaagaataagtggaaggtatctcttgccatcatttataatgagatttatgcttggccttgtagtt |
154 |
Q |
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| T |
9348497 |
caaagtttctgattctagaattggcattcaattcggaagaacaagtgcaaggtatctcttgccatcatttataatgagatttatggtaggccttgtagtt |
9348596 |
T |
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| Q |
155 |
ttctttgtgctattgatata |
174 |
Q |
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| T |
9348597 |
ttctttgtgcaattgatata |
9348616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 9254394 - 9254478
Alignment:
| Q |
143 |
ggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaatattgaagtttttcttc |
227 |
Q |
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| T |
9254394 |
ggccttctggttttctttgtgctattgatatatacttgtcggagaagacatatatcaatgtatgaagatattgaagtttttcttc |
9254478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 9320646 - 9320562
Alignment:
| Q |
143 |
ggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaatattgaagtttttcttc |
227 |
Q |
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| T |
9320646 |
ggccttctggttttctttgtgctattgatatatacttgtcggagaagacatatatcaatgtatgaagatattgaagtttttcttc |
9320562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Complemental strand, 9350963 - 9350879
Alignment:
| Q |
143 |
ggccttgtagttttctttgtgctattgatatatacatgtagaagaagacatacctcagcttacgaaaatattgaagtttttcttc |
227 |
Q |
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| T |
9350963 |
ggccttctggttttctttgtgctgttgatatatacttgtcggagaagacatatatcaatatatgaagatattgaagtttttcttc |
9350879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 15926486 - 15926660
Alignment:
| Q |
67 |
ttctaaaattgccattgaattaggaagaataagtggaaggtatctcttgccatcatttataatgagatttatgcttggccttg-tagttttctttgtgct |
165 |
Q |
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| T |
15926486 |
ttctaaaattggcattgagataggaagagtcacaggaagatatatcttgccatcacttatagtgagattt-tcattgggattcattgttttctttgttct |
15926584 |
T |
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| Q |
166 |
attgatatatacatgtagaagaagacatacctcagcttacgaaaatattgaagtttttcttcgtggaagtaccttg |
241 |
Q |
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|||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15926585 |
attgatatatacatgtcgaagcagacataactcaatttacgaaaatattgaagtttttcttcgtggaagtaccttg |
15926660 |
T |
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