View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594-Insertion-3 (Length: 753)

Name: NF4594-Insertion-3
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594-Insertion-3
NF4594-Insertion-3
[»] chr6 (7 HSPs)
chr6 (10-218)||(6721338-6721546)
chr6 (592-753)||(6721592-6721752)
chr6 (650-752)||(6716514-6716613)
chr6 (463-564)||(6716310-6716412)
chr6 (595-689)||(6716312-6716405)
chr6 (29-95)||(6716619-6716687)
chr6 (29-66)||(6721754-6721791)
[»] chr4 (4 HSPs)
chr4 (20-96)||(42230614-42230689)
chr4 (518-562)||(42230090-42230135)
chr4 (600-629)||(42230159-42230188)
chr4 (597-634)||(42230807-42230844)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 7e-85; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 6721338 - 6721546
Alignment:
Q  10 tattaggttacaattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgacataccttattatg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  6721338 tattaagttacaattgttgttttttggtttcctctattttgagttgaatgaaatatttaacatttttcttatctgcatcgtattgacataccttattatg 6721437  T
Q  110 ttttctcaccagaggttatgatcgtaaagaaaaggaaaagcgtacttgtattgaccannnnnnnacagatatcgcttaatcaagtaagattgggaatatt 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||       || |||||||||||||||||||||||||||||||||    
T  6721438 ttttctcaccagaggttatgatcgtaaagaaaagggaaagcgtacttgtaatgaccatttttttacggatatcgcttaatcaagtaagattgggaatatt 6721537  T
Q  210 cttagttta 218  Q
    |||||||||    
T  6721538 cttagttta 6721546  T

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Target: chr6; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 592 - 753
Target Start/End: Original strand, 6721592 - 6721752
Alignment:
Q  592 taatttagtttgtgattcaaagtttcaattttttgttgacttttcctctttgttgcggtcaatgaaaggtattcattgttaattttcaaccaaatatagc 691  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||    
T  6721592 taatttagtttgtgattcaaagtttcaattttttgttgacttt-cctctttgttgtgatcaatgaaaggtgttcattgttaattttcaaccaaatacagc 6721690  T
Q  692 agtatgaaaagaaaaataatggggaaaataatgttagtttgttattcaagttttaattgtta 753  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  6721691 agtatgaaaagaaaaataatggggaaaataatgttagcttgttattcaagtttcaattgtta 6721752  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 650 - 752
Target Start/End: Original strand, 6716514 - 6716613
Alignment:
Q  650 tcaatgaaaggtattcattgttaattttcaaccaaatatagcagtatgaaaagaaaaataatggggaaaataatgttagtttgttattcaagttttaatt 749  Q
    |||| |||||||||| ||| || |||||| |||||||| | |||||||||||||||||  ||||| |||||| ||||||||||||||| |||||||||||    
T  6716514 tcaacgaaaggtatttatttttcattttcgaccaaatacaacagtatgaaaagaaaaa--atggg-aaaatattgttagtttgttatttaagttttaatt 6716610  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 463 - 564
Target Start/End: Original strand, 6716310 - 6716412
Alignment:
Q  463 tttttagtttgtgattcgaagtttcagtattttgttgagtttcttcaatgttaagttcaatgaaagttattcattgttca-ttacactcatatatatcat 561  Q
    ||||||||||||||||| |||||||| | ||||||||  |||  ||  |||| | |||||||||||||| |||||||||| ||||| ||| |||||||||    
T  6716310 tttttagtttgtgattcaaagtttcaattttttgttggttttactctgtgttgatttcaatgaaagttaatcattgttcatttacattcaaatatatcat 6716409  T
Q  562 tat 564  Q
    |||    
T  6716410 tat 6716412  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 689
Target Start/End: Original strand, 6716312 - 6716405
Alignment:
Q  595 tttagtttgtgattcaaagtttcaattttttgttgacttttcctctttgttgcggtcaatgaaaggtattcattgttaattttcaaccaaatata 689  Q
    |||||||||||||||||||||||||||||||||||  |||| |||| |||||   |||||||||| || |||||||| |||| ||  ||||||||    
T  6716312 tttagtttgtgattcaaagtttcaattttttgttg-gttttactctgtgttgatttcaatgaaagttaatcattgttcatttacattcaaatata 6716405  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 6716619 - 6716687
Alignment:
Q  29 ttttttggtttcctct--attttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattga 95  Q
    ||||||||||||||||  |||||||||||| ||||||||| |||||||||| ||||||||  |||||||    
T  6716619 ttttttggtttcctctctattttgagttgagtgaaatatttaacatttttcatgtatgcaatgtattga 6716687  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 6721754 - 6721791
Alignment:
Q  29 ttttttggtttcctctattttgagttgaatgaaatatt 66  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6721754 ttttttggtttcctctttttttagttgaatgaaatatt 6721791  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 42230689 - 42230614
Alignment:
Q  20 caattgttgttttttggtttcctctattttgagttgaatgaaatattcaacatttttcttgtatgcatcgtattgac 96  Q
    |||||||| |||||||||||||| | |||||||||||||| |||||| |||||||||| ||||||||||||||||||    
T  42230689 caattgttattttttggtttcctttgttttgagttgaatg-aatatttaacatttttcatgtatgcatcgtattgac 42230614  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 562
Target Start/End: Complemental strand, 42230135 - 42230090
Alignment:
Q  518 ttcaatgaaagttattcattgttcatt-acactcatatatatcatt 562  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||    
T  42230135 ttcaatgaaagttaatcattattcatttacactcatatatatcatt 42230090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 629
Target Start/End: Complemental strand, 42230188 - 42230159
Alignment:
Q  600 tttgtgattcaaagtttcaattttttgttg 629  Q
    ||||||||||||||||||||||||||||||    
T  42230188 tttgtgattcaaagtttcaattttttgttg 42230159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Complemental strand, 42230844 - 42230807
Alignment:
Q  597 tagtttgtgattcaaagtttcaattttttgttgacttt 634  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  42230844 tagtttgtggttcaaagtttcaattttttattgacttt 42230807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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