View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_high_1 (Length: 626)
Name: NF4594_high_1
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 617
Target Start/End: Original strand, 14959818 - 14960438
Alignment:
| Q |
1 |
catgccataagttgatgccacaaactctctcaaacagtcccacaagtgcttatgtcaggttcaaataattcaatccaaacaagctctaagttcttaatta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14959818 |
catgtcataagttgatgccacaaactctctcaaacagtcccacaagtgcttatgtcaggttcaaataattcaatccaaacaagctctaagttcttaatta |
14959917 |
T |
|
| Q |
101 |
agctatttattcaaacttactatatagaattggcagtcttgttaacttaattttttcccacatcagtgatgtcatgtggagtttgagtgcataaccataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14959918 |
agctatttattcaaacttactatatagaattggcagtcttgttaacttacttttttcccacatcagtgatgtcatgtggagtttgagttcataaccataa |
14960017 |
T |
|
| Q |
201 |
tgctgctttaatgcagtgatgtcagcctaagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960018 |
tgctgctttaatgcagtgatgtcagcctaagtggactgcagggtgaaataaactgcatttatcaaagtgagtatattttcattcttcattttctcaagaa |
14960117 |
T |
|
| Q |
301 |
tgctaacatttatttttcttgtggaaactacagaaatgaacaagatagaattttgcacaccataatttaannnnnnnnncatctgttactgttgttgttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14960118 |
tgctaacatttatttttcttgtggaaactacagaaatgaacaagatagaattttgcacaccataatttaatttttttttcatctgttactgttgttgttt |
14960217 |
T |
|
| Q |
401 |
gcagatacagtggttattgtatcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattc----- |
495 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960218 |
gcagatacagtggttattgtttcaatagtggtctttgtagctttattcagcatacttggtttatggttcattgttgttctgagagcaatcaattcatggt |
14960317 |
T |
|
| Q |
496 |
---atggttcccaatcatgagtactgcagttggctaactaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccat |
592 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14960318 |
tgaatggttcccaatcatgagtactgcagttgg----ctaacttacttatggacatatttacttggtaacactatttgaagtttcttttttatgtaccat |
14960413 |
T |
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| Q |
593 |
gaaaatgaacatgacctttgcttct |
617 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
14960414 |
gaaaatgaacatgacctttgcttct |
14960438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41016242 - 41016295
Alignment:
| Q |
1 |
catgccataagttgatgccacaaactctctcaaacagtcccacaagtgcttatg |
54 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | ||||||| ||||||||||||| |
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|
| T |
41016242 |
catgccataagttgtttccataaactctcttatacagtcctacaagtgcttatg |
41016295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 1084124 - 1084088
Alignment:
| Q |
22 |
aaactctctcaaacagtcccacaagtgcttatgtcag |
58 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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|
| T |
1084124 |
aaactctctcaaacagtttcacaagtgcttatgtcag |
1084088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 22667488 - 22667524
Alignment:
| Q |
22 |
aaactctctcaaacagtcccacaagtgcttatgtcag |
58 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
22667488 |
aaactctctcaaacagtctcacaagtgcttatgtcag |
22667524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 22724127 - 22724163
Alignment:
| Q |
22 |
aaactctctcaaacagtcccacaagtgcttatgtcag |
58 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
22724127 |
aaactctctcaaacagtctcacaagtgcttatgtcag |
22724163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 11041208 - 11041180
Alignment:
| Q |
25 |
ctctctcaaacagtcccacaagtgcttat |
53 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
11041208 |
ctctctcaaacagtcccacaagtgcttat |
11041180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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