View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_high_10 (Length: 251)

Name: NF4594_high_10
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_high_10
NF4594_high_10
[»] chr7 (7 HSPs)
chr7 (20-251)||(21292133-21292364)
chr7 (29-114)||(21949745-21949830)
chr7 (29-114)||(46809037-46809122)
chr7 (29-132)||(6617028-6617130)
chr7 (29-114)||(34638490-34638575)
chr7 (29-114)||(42053624-42053709)
chr7 (29-112)||(20647502-20647584)
[»] chr4 (13 HSPs)
chr4 (17-246)||(29688943-29689170)
chr4 (20-251)||(37011115-37011345)
chr4 (36-132)||(23493371-23493466)
chr4 (166-246)||(29689323-29689401)
chr4 (29-132)||(34806285-34806387)
chr4 (29-132)||(36316192-36316294)
chr4 (29-132)||(36330401-36330503)
chr4 (29-115)||(53095190-53095276)
chr4 (31-132)||(27020242-27020342)
chr4 (29-114)||(39295917-39296002)
chr4 (29-114)||(5948185-5948270)
chr4 (110-164)||(34851624-34851678)
chr4 (50-114)||(32107426-32107490)
[»] chr6 (6 HSPs)
chr6 (20-244)||(11121250-11121462)
chr6 (29-90)||(1122221-1122282)
chr6 (30-105)||(22460488-22460563)
chr6 (29-114)||(18898895-18898980)
chr6 (29-114)||(15559665-15559752)
chr6 (113-164)||(24316543-24316594)
[»] chr8 (8 HSPs)
chr8 (20-170)||(18464653-18464803)
chr8 (110-251)||(3730289-3730429)
chr8 (29-114)||(39617897-39617982)
chr8 (23-114)||(31441793-31441884)
chr8 (29-114)||(12498711-12498796)
chr8 (29-114)||(18381355-18381440)
chr8 (30-112)||(22935467-22935548)
chr8 (40-114)||(6420917-6420991)
[»] chr5 (9 HSPs)
chr5 (29-132)||(16044424-16044526)
chr5 (29-114)||(5808337-5808422)
chr5 (29-114)||(1594551-1594636)
chr5 (29-132)||(16484944-16485046)
chr5 (29-132)||(39560889-39560991)
chr5 (29-132)||(40835039-40835141)
chr5 (29-126)||(640968-641063)
chr5 (29-114)||(39004880-39004965)
chr5 (29-114)||(16482495-16482580)
[»] chr2 (7 HSPs)
chr2 (29-123)||(19622575-19622668)
chr2 (29-114)||(4647942-4648027)
chr2 (29-126)||(7647550-7647645)
chr2 (29-84)||(17419096-17419151)
chr2 (29-71)||(30960864-30960906)
chr2 (173-243)||(12111633-12111703)
chr2 (29-114)||(40267811-40267896)
[»] chr3 (11 HSPs)
chr3 (29-114)||(3335960-3336045)
chr3 (29-132)||(22402404-22402506)
chr3 (29-132)||(33951663-33951765)
chr3 (29-111)||(47330045-47330127)
chr3 (29-105)||(4545694-4545770)
chr3 (29-132)||(37969174-37969276)
chr3 (29-97)||(25899153-25899221)
chr3 (29-132)||(4062369-4062471)
chr3 (35-115)||(23687689-23687768)
chr3 (35-115)||(24059926-24060005)
chr3 (111-164)||(1576078-1576131)
[»] chr1 (14 HSPs)
chr1 (29-114)||(28641570-28641655)
chr1 (29-132)||(2027824-2027926)
chr1 (29-132)||(49008169-49008271)
chr1 (29-114)||(2843954-2844039)
chr1 (29-114)||(18414533-18414618)
chr1 (29-114)||(32519749-32519834)
chr1 (29-113)||(45541463-45541547)
chr1 (17-84)||(32829231-32829297)
chr1 (95-170)||(36085857-36085932)
chr1 (29-114)||(8110690-8110775)
chr1 (17-84)||(5965116-5965182)
chr1 (37-84)||(15853360-15853407)
chr1 (29-132)||(24779858-24779960)
chr1 (110-164)||(32829166-32829220)
[»] scaffold0009 (1 HSPs)
scaffold0009 (29-114)||(194652-194737)
[»] scaffold0256 (1 HSPs)
scaffold0256 (40-132)||(4019-4110)
[»] scaffold0014 (1 HSPs)
scaffold0014 (28-132)||(20367-20470)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 21292364 - 21292133
Alignment:
Q  20 atgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagc 119  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21292364 atgcttgcaagtggggagtggacttgaccgccaacacggtaattaacgaattaacacgcaccaaccgtttactgcgatgatcaacaacaaattaatcagc 21292265  T
Q  120 catttctagcccacatcaagcgattatacaagcacaacctaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacacggt 219  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21292264 catttctagcccacatcaagcgatcatacaagcacaaactaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacacggc 21292165  T
Q  220 agcgaatccacccaccaaccactcactaagac 251  Q
    ||||| ||||||||||||||||||||| ||||    
T  21292164 agcgagtccacccaccaaccactcactgagac 21292133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 21949830 - 21949745
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||  |||| |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  21949830 agtggggagtagattcaaccaccaacacggtaattaaaaaatccacacgcacgaactgtttactgctatgatcaacatcaaattaa 21949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 46809037 - 46809122
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  46809037 agtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 46809122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 6617028 - 6617130
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||| ||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  6617028 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 6617126  T
Q  129 ccca 132  Q
    ||||    
T  6617127 ccca 6617130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 34638575 - 34638490
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| |||||||||||||||||  ||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  34638575 agtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaattaa 34638490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 42053624 - 42053709
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| |||||||||||||||||  ||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  42053624 agtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaattaa 42053709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 20647502 - 20647584
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaatt 112  Q
    ||||| ||| |||||||||| ||||||||||| ||||| |||| |||  |||||||| ||| ||| ||| ||||||||||||||    
T  20647502 agtggagagcggattcgaccgccaacacggtatttaacaaatccaca-tcaccaaccatttgttgtgataatcaacaacaaatt 20647584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 29688943 - 29689170
Alignment:
Q  17 caaatgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatc 116  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||| || |||||||| |||||| ||||||||| |||||||||||||||    
T  29688943 caaatgcttgaaagtggggagtgggttcgaccgccaacacggtaattagcgaatccacgcgcaccaatcgtttactgcgatgattaacaacaaattaatc 29689042  T
Q  117 agccatttctagcccacatcaagcgattatacaagcacaacctaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacac 216  Q
    || |||||| |||||||| || | | | |||| ||||||||||||||| |||||||| |||||||| || |||||||| |||||| |||| | | |||||    
T  29689043 agtcatttccagcccacaacatgtggtcatactagcacaacctaggcacaagtctgagctccaacc-ttcaccaatggcaatgaa-ccgatcgccaacac 29689140  T
Q  217 ggtagcgaatccacccaccaaccactcact 246  Q
    ||||||| ||||||| ||||||||||||||    
T  29689141 ggtagcggatccacctaccaaccactcact 29689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 37011115 - 37011345
Alignment:
Q  20 atgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaa-attaatcag 118  Q
    ||||||| |||||||||||| ||| ||||   |||||  |||||| | |||| ||  |||||||| ||||| | |||||||||| ||||| |||||||||    
T  37011115 atgcttgaaagtggggagtgaatttgaccgttaacacaataattagcaaatccacctgcaccaactgtttactacgatgatcaa-aacaatattaatcag 37011213  T
Q  119 ccatttctagcccacatcaagcgattatacaagcacaacctaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacacgg 218  Q
    |||||| |||||||||  ||||||| | ||||||||||| |||||| |||||| || |||||||||| |||||||| ||||||||||||| | ||||||     
T  37011214 ccatttttagcccacaaaaagcgatcacacaagcacaacataggcacaagtctaaaatccaaccttt-accaatggcaatgaatccgaccgccaacacga 37011312  T
Q  219 tagcgaatccacccaccaaccactcactaagac 251  Q
    |||||||||||| ||||||||||||||||||||    
T  37011313 tagcgaatccactcaccaaccactcactaagac 37011345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 132
Target Start/End: Original strand, 23493371 - 23493466
Alignment:
Q  36 agtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctagccca 132  Q
    ||||||||| ||| ||||||||||||||  |||||| || || |||||| ||||| ||| |||| | |||||||||||| |||||||||||||||||    
T  23493371 agtggattctaccgccaacacggtaattcgcgaatccactcgtaccaactgtttactgccatgaactacaacaaattaa-cagccatttctagccca 23493466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 29689323 - 29689401
Alignment:
Q  166 aagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacacggtagcgaatccacccaccaaccactcact 246  Q
    |||||||| ||||||||||  |||||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||||    
T  29689323 aagtctgagctccaaccttc-accaatggcaatgaa-ccgaccgccaacacggtagcgaatccacctaccaaccactcact 29689401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 34806285 - 34806387
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||||||||  ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  34806285 agtggggagcagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa-cagtcatttctgg 34806383  T
Q  129 ccca 132  Q
    ||||    
T  34806384 ccca 34806387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 36316294 - 36316192
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||||||||| ||||| ||| ||||||||||||||||  |||  |||||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  36316294 agtggggagtagattcaaccgccaacacggtaattaaaaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa-cagtcatttctgg 36316196  T
Q  129 ccca 132  Q
    ||||    
T  36316195 ccca 36316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 36330503 - 36330401
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||||||||| ||||| ||| ||||||||||||||||  |||  |||||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  36330503 agtggggagtagattcaaccgccaacacggtaattaaaaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa-cagtcatttctgg 36330405  T
Q  129 ccca 132  Q
    ||||    
T  36330404 ccca 36330401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 53095276 - 53095190
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaat 115  Q
    ||||| |||||||| | |||||||||||||||| | ||||||| ||| ||||||||| |||| |||||| ||| ||||||| |||||    
T  53095276 agtggagagtggatccaaccaccaacacggtaaatgacgaatctacatgcaccaaccatttactgcgataatccacaacaagttaat 53095190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 27020342 - 27020242
Alignment:
Q  31 tggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctagcc 130  Q
    |||||||| ||||| ||| ||||||||||||||||| |||  ||| |||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |||    
T  27020342 tggggagtagattcaaccgccaacacggtaattaacaaattcacatgcactaactgtttactgctatgatcaacatcaaattaa-cagtcatttctggcc 27020244  T
Q  131 ca 132  Q
    ||    
T  27020243 ca 27020242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 39295917 - 39296002
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||  ||||||||||||||||| |||| |||| ||| ||| ||||| ||| |||||||||| ||||||||    
T  39295917 agtggggagtagattcaacagccaacacggtaattaacaaatccacacacactaactgtttactgctatgatcaacatcaaattaa 39296002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 5948185 - 5948270
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| |||||||||||||||||  ||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  5948185 agtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaattaa 5948270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 34851624 - 34851678
Alignment:
Q  110 attaatcagccatttctagcccacatcaagcgattatacaagcacaacctaggca 164  Q
    |||||| |||||||||| |||||||||||||||  |||||| ||||||| |||||    
T  34851624 attaattagccatttctggcccacatcaagcgaacatacaaacacaaccgaggca 34851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 32107490 - 32107426
Alignment:
Q  50 ccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||||| |||| |||| || |||||||||| |||||||||||   | ||||||||||||    
T  32107490 ccaacacggtaaataacaaatccactcgcaccaaccatttattgcgataggccacaacaaattaa 32107426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 11121462 - 11121250
Alignment:
Q  20 atgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagc 119  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||             
T  11121462 atgcttgaaagtggggagtggattcgaccgccaacacggtaattaacgaatccacacgcaccaaccgtttactgcgatgatcaatagcaaa--------- 11121372  T
Q  120 catttctagcccacatcaagcgattatacaagcacaacctaggcataagtctgaactccaaccttttaccaatggaaatgaatccgaccacgaacacggt 219  Q
       |||| ||||||| ||||| || || |||||||||| |||||| || | |||||||||||||||||||||||| |||||||  |||| | ||| ||||    
T  11121371 ---ttctggcccacaacaagccatcatgcaagcacaacttaggcacaattatgaactccaaccttttaccaatggcaatgaatttgaccgccaacgcggt 11121275  T
Q  220 agcgaatccacccaccaaccactca 244  Q
    ||||||| ||||| | |||||||||    
T  11121274 agcgaatacacccgcgaaccactca 11121250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 1122282 - 1122221
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgttta 90  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||||| |||| |||||    
T  1122282 agtggggagtggattcgaccgccaacacggtaattagcgaatccacacgcaacaacggttta 1122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 22460488 - 22460563
Alignment:
Q  30 gtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaaca 105  Q
    ||||||||| ||||| ||| |||||||||||| || ||||||||||| |||||||| |||| |||||| |||||||    
T  22460488 gtggggagtagattcaaccgccaacacggtaaatagcgaatcaacacacaccaaccatttaatgcgatcatcaaca 22460563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 18898980 - 18898895
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  18898980 agtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 18898895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 15559665 - 15559752
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgc--gatgatcaacaacaaattaa 114  Q
    ||||||| ||||||||||| |||||||| ||||||| |||||| |||||||| |||  |||| |||   |||||||||||||| ||||    
T  15559665 agtggggggtggattcgactaccaacactgtaattagcgaatccacacgcacaaactatttactgctatatgatcaacaacaacttaa 15559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 24316594 - 24316543
Alignment:
Q  113 aatcagccatttctagcccacatcaagcgattatacaagcacaacctaggca 164  Q
    |||||||||||||||||| ||| |||| ||| |||||||||||||| |||||    
T  24316594 aatcagccatttctagcctacaacaagagatcatacaagcacaaccgaggca 24316543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 18464803 - 18464653
Alignment:
Q  20 atgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagc 119  Q
    ||||||| ||||||||||||||||||||| || ||||||||| ||||||||| || ||||||| | ||||| |||||||||||||  |||||||||||||    
T  18464803 atgcttgaaagtggggagtggattcgaccgccgacacggtaaataacgaatccacgcgcaccacctgtttactgcgatgatcaacggcaaattaatcagc 18464704  T
Q  120 catttctagcccacatcaagcgattatacaagcacaacctaggcataagtc 170  Q
    ||||||| |||||||||||||||  ||||| |||||||||||||| |||||    
T  18464703 catttctggcccacatcaagcgaacatacaggcacaacctaggcacaagtc 18464653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 3730429 - 3730289
Alignment:
Q  110 attaatcagccatttctagcccacatcaagcgattatacaagcacaacctaggcataagtctgaactccaaccttttaccaatggaaatgaatccgacca 209  Q
    ||||||||||||||||| ||| ||| |||||||| |||||||||| ||||||||  ||||| ||||| |||||||| |||||||| |||||||||||||     
T  3730429 attaatcagccatttctggccaacaacaagcgatcatacaagcactacctaggctcaagtccgaactacaaccttt-accaatggcaatgaatccgaccg 3730331  T
Q  210 cgaacacggtagcgaatccacccaccaaccactcactaagac 251  Q
    | ||||||||| |||||| |||||||||||||| ||| ||||    
T  3730330 caaacacggtatcgaatctacccaccaaccactaactgagac 3730289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 39617982 - 39617897
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  39617982 agtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 39617897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 31441793 - 31441884
Alignment:
Q  23 cttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    ||||| |||||||||||||||| ||| ||||||| || |||||| |||| ||||||||| | |||||| |||||| ||||||| ||||||||    
T  31441793 cttgctagtggggagtggattcaaccgccaacacagtcattaacaaatccacacgcacctatcgtttactgcgatcatcaacagcaaattaa 31441884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 12498796 - 12498711
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  12498796 agtgaggagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 12498711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 18381440 - 18381355
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  18381440 agtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 18381355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 22935548 - 22935467
Alignment:
Q  30 gtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaatt 112  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||  |||||||| ||| ||| ||| | | ||||||||||    
T  22935548 gtggggagtggattcgaccgccaacacggtagttaacgaatccaca-tcaccaaccatttgttgtgataaaccacaacaaatt 22935467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 6420917 - 6420991
Alignment:
Q  40 gattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    ||||| ||| |||||||||||||||||  ||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  6420917 gattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaattaa 6420991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 16044526 - 16044424
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    ||||||||  |||||||||| |||||| |||||||| |||||| || |||||||||| |||| | ||||||||||||||||||||| ||| ||||| |||    
T  16044526 agtggggaaaggattcgaccgccaacatggtaattagcgaatccacccgcaccaaccatttactacgatgatcaacaacaaattaa-cagtcatttatag 16044428  T
Q  129 ccca 132  Q
    ||||    
T  16044427 ccca 16044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 5808422 - 5808337
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  5808422 agtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 5808337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 1594636 - 1594551
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  1594636 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaattaa 1594551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 16484944 - 16485046
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||| ||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  16484944 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 16485042  T
Q  129 ccca 132  Q
    ||||    
T  16485043 ccca 16485046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 39560991 - 39560889
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| | |||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  39560991 agtgtggagtagattcaaccgccaacacggtaattaacaaatccatacgcactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 39560893  T
Q  129 ccca 132  Q
    ||||    
T  39560892 ccca 39560889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 40835039 - 40835141
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| ||| |||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  40835039 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacatgcactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 40835137  T
Q  129 ccca 132  Q
    ||||    
T  40835138 ccca 40835141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 641063 - 640968
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttct 126  Q
    |||||||||||||||||||| ||||||||||| |||||||||| |||  |||| ||| ||| ||| ||| ||| |||||||||| || ||||||||||    
T  641063 agtggggagtggattcgaccgccaacacggtagttaacgaatccaca-tcaccgaccatttgttgtgataatccacaacaaattcat-agccatttct 640968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 39004880 - 39004965
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| |||  |||||||||||||||| |||| |||||||| ||| |||||  || |||||||||| ||||||||    
T  39004880 agtggggagtagattcaaccgtcaacacggtaattaacaaatccacacgcactaactgtttacagctatgatcaacatcaaattaa 39004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 16482495 - 16482580
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| |||||||||||||||||  ||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  16482495 agtgggaagtagattcaaccgccaacacggtaattaacagattcacacgcactaactgtttactgctatgatcaacatcaaattaa 16482580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 19622575 - 19622668
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatt 123  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||  ||  |||||||||| | | |||||||| ||||||||    
T  19622575 agtggggagtggatttgaccaccaacacggtaattaacgaatccacacacaccaaccagttgctgcgatgatctatagcaaattaa-cagccatt 19622668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 4648027 - 4647942
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||| ||| |||| ||| ||||| ||| |||||||||| ||||||||    
T  4648027 agtggggagtagattcaaccgccaacacggtaattaacaaatccacatgcactaactgtttactgctatgatcaacatcaaattaa 4647942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 7647645 - 7647550
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttct 126  Q
    ||||||||||| |||||||| ||||||||||| |||||||||| |||  |||||||| ||| ||| ||| ||| |||||||||| || ||||||||||    
T  7647645 agtggggagtgcattcgaccgccaacacggtagttaacgaatccaca-tcaccaaccatttgttgtgataatccacaacaaattcat-agccatttct 7647550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 17419096 - 17419151
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaac 84  Q
    ||||| ||||| |||||||| ||||||||||||||| |||||| ||||||||||||    
T  17419096 agtggcgagtgaattcgaccgccaacacggtaattagcgaatccacacgcaccaac 17419151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 30960864 - 30960906
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatc 71  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  30960864 agtggggagcggattcgaccgccaacacggtaattaacgaatc 30960906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 12111633 - 12111703
Alignment:
Q  173 aactccaaccttttaccaatggaaatgaatccgaccacgaacacggtagcgaatccacccaccaaccactc 243  Q
    |||||||||||||||| ||||| ||| |||| |||  | ||||| |||||||||||||| ||||| |||||    
T  12111633 aactccaaccttttacaaatggtaataaatctgactgccaacaccgtagcgaatccaccaaccaatcactc 12111703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 40267811 - 40267896
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||| ||||| ||||  ||| ||||||||||||||||| |||  |||||||| ||  ||||| ||| |||||||||| ||||||||    
T  40267811 agtgaggagtagattaaaccgccaacacggtaattaacaaattcacacgcactaattgtttactgctatgatcaacatcaaattaa 40267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 3336045 - 3335960
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  3336045 agtggggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaactgtttactgctatgatcaacatcaaattaa 3335960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 22402404 - 22402506
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  22402404 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 22402502  T
Q  129 ccca 132  Q
    ||||    
T  22402503 ccca 22402506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 33951765 - 33951663
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||||||||| ||||| ||| ||||||||||||||||  |||| |||||||| ||| ||||| ||| |||||||||| ||||||||| || ||||||| |    
T  33951765 agtggggagtagattcaaccgccaacacggtaattaaaaaatccacacgcactaactgtttactgctatgatcaacatcaaattaat-agtcatttctgg 33951667  T
Q  129 ccca 132  Q
    ||||    
T  33951666 ccca 33951663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 47330127 - 47330045
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaat 111  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||| ||| |||||||||| |||||    
T  47330127 agtggggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaactgtttactgctatgatcaacatcaaat 47330045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 4545770 - 4545694
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaaca 105  Q
    |||||||| ||||||||||| |||||| ||||| || |||||||||||  ||||||| |||| ||||||||||||||    
T  4545770 agtggggattggattcgaccgccaacatggtaaatagcgaatcaacacataccaaccatttactgcgatgatcaaca 4545694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 37969174 - 37969276
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||| ||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  37969174 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 37969272  T
Q  129 ccca 132  Q
    ||||    
T  37969273 ccca 37969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 25899221 - 25899153
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgat 97  Q
    ||||| |||| ||||||||| |||||||||||||||| ||| | ||| |||||||||||||| ||||||    
T  25899221 agtggagagtagattcgaccgccaacacggtaattaatgaaaccacatgcaccaaccgtttagtgcgat 25899153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 4062471 - 4062369
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||| ||| ||| ||||| ||| ||||| |||| |||||||| ||| ||||||| |    
T  4062471 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgattaacatcaaattaa-cagtcatttctgg 4062373  T
Q  129 ccca 132  Q
    ||||    
T  4062372 ccca 4062369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 23687689 - 23687768
Alignment:
Q  35 gagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaat 115  Q
    ||||||||||||||  |||||| |||||| | |||||| || ||||||||| |||| |||||| ||| |||||||||||||    
T  23687689 gagtggattcgaccggcaacacagtaattgatgaatca-catgcaccaaccatttactgcgataatccacaacaaattaat 23687768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 24059926 - 24060005
Alignment:
Q  35 gagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaat 115  Q
    ||||||||||||||  |||||| |||||| | |||||| || ||||||||| |||| |||||| ||| |||||||||||||    
T  24059926 gagtggattcgaccggcaacacagtaattgatgaatca-catgcaccaaccatttactgcgataatccacaacaaattaat 24060005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 1576131 - 1576078
Alignment:
Q  111 ttaatcagccatttctagcccacatcaagcgattatacaagcacaacctaggca 164  Q
    ||||||| |||||||| ||||||| |||| ||| ||||||||||||||| ||||    
T  1576131 ttaatcaaccatttctggcccacaacaagtgatcatacaagcacaaccttggca 1576078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 28641655 - 28641570
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||||||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  28641655 agtggggagtagattcaaccaccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 28641570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 2027824 - 2027926
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||| | | |||||||||| |||||||| ||| ||||||| |    
T  2027824 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacgcactaacagtttactactatgatcaacatcaaattaa-cagtcatttctgg 2027922  T
Q  129 ccca 132  Q
    ||||    
T  2027923 ccca 2027926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 49008169 - 49008271
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||| ||||| ||||| ||| |||| |||||||||||| |||| |||||||| ||| ||||| ||| |||||||||| |||||||| ||| ||||||| |    
T  49008169 agtgtggagtagattcaaccgccaatacggtaattaacaaatccacacgcactaacagtttactgctatgatcaacatcaaattaa-cagtcatttctgg 49008267  T
Q  129 ccca 132  Q
    ||||    
T  49008268 ccca 49008271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 2843954 - 2844039
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||  ||| |||| ||| ||||| ||| |||||||||| ||||||||    
T  2843954 agtggggagtagattcaaccgccaacacggtaattaacaaattcacatgcactaacagtttactgctatgatcaacatcaaattaa 2844039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 18414533 - 18414618
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  18414533 agtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 18414618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 32519834 - 32519749
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  32519834 agtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 32519749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 45541463 - 45541547
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaatta 113  Q
    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||| ||| ||| ||||| ||| |||||||||| |||||||    
T  45541463 agtgtggagtagattcaaccgccaacacggtaattaacaaatccacacacactaacagtttactgctatgatcaacatcaaatta 45541547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 32829297 - 32829231
Alignment:
Q  17 caaatgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaac 84  Q
    |||||||||| || ||||| |||||||||||| |||||||||||||||||||||  || |||||||||    
T  32829297 caaatgcttgaaaatgggg-gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 32829231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 36085857 - 36085932
Alignment:
Q  95 gatgatcaacaacaaattaatcagccatttctagcccacatcaagcgattatacaagcacaacctaggcataagtc 170  Q
    |||||||||| ||||||| ||||||||| ||| ||||||| ||||| |  ||||||||||||||||  ||||||||    
T  36085857 gatgatcaaccacaaatttatcagccatctctggcccacaacaagcaaacatacaagcacaacctatacataagtc 36085932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 8110690 - 8110775
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||||||| ||||| ||| ||||||||||||||||| |||  |||||||| ||   |||| ||| |||||||||| ||||||||    
T  8110690 agtggggagtagattcaaccgccaacacggtaattaacaaattcacacgcactaaatatttactgctatgatcaacatcaaattaa 8110775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 5965182 - 5965116
Alignment:
Q  17 caaatgcttgcaagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaac 84  Q
    |||||||||| || ||||| ||| |||||||| |||||||||||||||||||||  || |||||||||    
T  5965182 caaatgcttgaaaatgggg-gtgaattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 5965116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 15853360 - 15853407
Alignment:
Q  37 gtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaac 84  Q
    |||||||||||| |||||||||||||||||||||  || |||||||||    
T  15853360 gtggattcgaccgccaacacggtaattaacgaattcacgcgcaccaac 15853407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 24779858 - 24779960
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctag 128  Q
    |||||||||| ||||| ||| | ||||||||||||||| |||| | |||||| ||| ||||| | | |||||||||| |||| ||| ||| ||||||| |    
T  24779858 agtggggagtagattcaaccgctaacacggtaattaacaaatccagacgcactaactgtttacttctatgatcaacatcaaa-taaacagtcatttctgg 24779956  T
Q  129 ccca 132  Q
    ||||    
T  24779957 ccca 24779960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 32829220 - 32829166
Alignment:
Q  110 attaatcagccatttctagcccacatcaagcgattatacaagcacaacctaggca 164  Q
    |||||| |||||||||| |||||||||||||||  |||||| ||||||| |||||    
T  32829220 attaattagccatttctggcccacatcaagcgaacatacaaacacaaccgaggca 32829166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 194737 - 194652
Alignment:
Q  29 agtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaa 114  Q
    |||||| ||| ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||| ||| |||||||||| ||||||||    
T  194737 agtgggaagtagattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttactgctatgatcaacatcaaattaa 194652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Complemental strand, 4110 - 4019
Alignment:
Q  40 gattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttctagccca 132  Q
    ||||| ||| ||||||||||||||||| |||  |||||||| ||| ||||||| | |||||||||| |||||||| ||| ||||||| |||||    
T  4110 gattcaaccgccaacacggtaattaacaaattcacacgcactaactgtttatttctatgatcaacatcaaattaa-cagtcatttctggccca 4019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 20367 - 20470
Alignment:
Q  28 aagtggggagtggattcgaccaccaacacggtaattaacgaatcaacacgcaccaaccgtttattgcgatgatcaacaacaaattaatcagccatttcta 127  Q
    ||||| ||| ||||| ||||| ||| |||| ||| ||||||||| ||||| ||||||| |||  |||||  ||| ||||||||||||| | ||||||||     
T  20367 aagtgtggaatggatccgaccgccagcacgataactaacgaatctacacgtaccaaccatttgctgcgacaatccacaacaaattaat-aaccatttctg 20465  T
Q  128 gccca 132  Q
    |||||    
T  20466 gccca 20470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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