View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4594_high_18 (Length: 210)
Name: NF4594_high_18
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 26453086 - 26452906
Alignment:
| Q |
16 |
atgaacaagcttatacttagccctgcttctatcacagcctttgttcgaaagcagaaccgcggcaccaccaacgcgaaacaaacaattcggaatcaacata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26453086 |
atgaacaagcttatacttagccctgcttctatcacagcctttgttcgaaagcagaaccgcggcaccaccaacgcgaaacaaacaattcggaatcaacata |
26452987 |
T |
|
| Q |
116 |
gatttcttattaccaaaataccaattttgagtaatattctcagtactaacaacaacagcataagtatttctatgaacttga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26452986 |
gatttcttattaccaaaataccaattttgagtaatattctcagtactaacaacaacagcataagtatttctatgaacttga |
26452906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University