View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_high_5 (Length: 342)
Name: NF4594_high_5
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 2020729 - 2020421
Alignment:
| Q |
19 |
gaaacacgaaagggacatatatatgtactgtaccaaaacactatatatacaaacagtgcaacaaaatacaagtgggcaagaagaacagaagagactgcaa |
118 |
Q |
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| T |
2020729 |
gaaacatgaaagggacatatatatgcaatgtaccaaaacactatatatacaaacagtgcaacaaaatacaagtgggcaagaagaacagaagagacttcaa |
2020630 |
T |
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| Q |
119 |
tcatagaaccctctataacaggaatatgtataaatcatctaaaattagtgttgtcaatcacaaaaaatagcaacttgttcaaattcccttacgctgcact |
218 |
Q |
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| T |
2020629 |
tcatagaaccctctataacaggaatatgtataaatcatctaaaattagtgttgtcaatcgcaaaaaatagcaacttgttcaaattcccttacgctgc-ct |
2020531 |
T |
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| Q |
219 |
gttatagtgccactataaccgctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcagtgttttggacaacttaccatagataattt |
318 |
Q |
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| T |
2020530 |
gttatagtgccactataaccgctttttgacagcagtgttactaaatggtggtcatggcaccaccatggcggtgttttggacaacttaccatagataattt |
2020431 |
T |
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| Q |
319 |
gtgaaggaat |
328 |
Q |
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| T |
2020430 |
gtgaaggaat |
2020421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 2018053 - 2017964
Alignment:
| Q |
198 |
caaattcccttacgctgcactgttatagtgccactataaccgctttttgacagcagtgttactaaatggtggtcatggcaccaccatggc |
287 |
Q |
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| T |
2018053 |
caaatccctttacgctgcactgtcatagcgccactataaccgctttttgacaacagtgttactaaatggtggtcgtggcaccaccatggc |
2017964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 2035524 - 2035443
Alignment:
| Q |
157 |
ctaaaattagtgttgtcaatcacaaaaaatagcaacttgttcaaattcccttacgctgcactgttatagtgccactataacc |
238 |
Q |
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| T |
2035524 |
ctaaaatcagtgttgtcaatcgcaaaaaataggaatttgttcaaattcctttacgctgcattgttatagccccactataacc |
2035443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 2018100 - 2018050
Alignment:
| Q |
132 |
tataacaggaatatgtataaatcatctaaaattagtgttgtcaatcacaaa |
182 |
Q |
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| T |
2018100 |
tataacacaaatatgtataaatcatctaaaatcaatgttatcaatcacaaa |
2018050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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