View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_high_6 (Length: 331)

Name: NF4594_high_6
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_high_6
NF4594_high_6
[»] chr2 (2 HSPs)
chr2 (6-225)||(21594322-21594544)
chr2 (291-331)||(21594216-21594256)
[»] scaffold0005 (2 HSPs)
scaffold0005 (47-225)||(33804-33984)
scaffold0005 (293-331)||(34052-34090)
[»] chr4 (2 HSPs)
chr4 (47-225)||(14805743-14805923)
chr4 (293-331)||(14805637-14805675)
[»] chr7 (1 HSPs)
chr7 (47-225)||(12924865-12925045)
[»] scaffold0002 (2 HSPs)
scaffold0002 (47-225)||(363406-363586)
scaffold0002 (291-331)||(363652-363692)
[»] chr6 (4 HSPs)
chr6 (47-225)||(14198871-14199051)
chr6 (47-220)||(14896489-14896664)
chr6 (291-331)||(14896378-14896418)
chr6 (291-331)||(14199102-14199142)
[»] chr3 (2 HSPs)
chr3 (47-221)||(16607905-16608080)
chr3 (291-331)||(16608150-16608190)
[»] scaffold0009 (1 HSPs)
scaffold0009 (291-331)||(44551-44591)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 21594544 - 21594322
Alignment:
Q  6 ataactaagacaacaatttaacttccttnnnnnnnnnnnnncaattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaaca 102  Q
    ||||||||||||||||||||||||||||             |||||||||||| |||||||||||||||||||||||||||||||||   |||| |||||    
T  21594544 ataactaagacaacaatttaacttccttaaaaaaaaaacaacaattttactaacatcttttaatagatattaacaaacagtttaaatgttaatcccaaca 21594445  T
Q  103 annnnnnnacttataattttaaataaataagaaaaactaacctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaa 202  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21594444 atatttttacttataattttaaataaataagaaaaactaacctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaa 21594345  T
Q  203 caacttgtaataggaaatggaac 225  Q
    |||||||||||||||||||||||    
T  21594344 caacttgtaataggaaatggaac 21594322  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 21594256 - 21594216
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21594256 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 21594216  T

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Target: scaffold0005 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 33804 - 33984
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||        |||||||||||||||||||||||||||||||||    
T  33804 caattttactaacatcttttaatagatattaacaaacagtttaaatgttaatcacaaca-tttttttacttataattttaaataaataagaaaaactaac 33902  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatggaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33903 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcagcaacaacttgtaataggaaatggaac 33984  T

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Target: scaffold0005; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 34052 - 34090
Alignment:
Q  293 tgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34052 tgaaatcaattaagaaaatagttaccttatatgaagaaa 34090  T

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Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 14805923 - 14805743
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||        |||||||||||||||||||||||||||||||||    
T  14805923 caattttactaacatcttttaatagatattaacaaacagtttaaatgttaatcacaaca-tttttttacttataattttaaataaataagaaaaactaac 14805825  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatggaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14805824 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcagcaacaacttgtaataggaaatggaac 14805743  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 14805675 - 14805637
Alignment:
Q  293 tgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14805675 tgaaatcaattaagaaaatagttaccttatatgaagaaa 14805637  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 12925045 - 12924865
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||        |||||||||||||||||||||||||| ||||||    
T  12925045 caattttactaacatcttttaatagatattaacaaacagtttaaatgctaatcacaaca-tttttttacttataattttaaataaataagaaatactaac 12924947  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatggaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12924946 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaattgaac 12924865  T

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Target: scaffold0002 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 363406 - 363586
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||  |||||||||||||||||||||||||||||||||   ||||||||||        |||||||||||||||||||||| ||||||||||    
T  363406 caattttactagcatcttttaatagatattaacaaacagtttaaatgctaatcacaaca-tttttttacttataattttaaataaataataaaaactaac 363504  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatggaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  363505 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaattgaac 363586  T

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Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 363652 - 363692
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  363652 gttgaaatcaattaagaaaatagttaccttacatgaagaaa 363692  T

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Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 14198871 - 14199051
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||||   ||||||||||        |||||||||||||||||||||||||||||||||    
T  14198871 caattttactaacatcttttaatagatattaacaaacagtttaaatgctaatcacaaca-tttttttacttataattttaaataaataagaaaaactaac 14198969  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatggaac 225  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14198970 ctcaagtaatataatttaatgacagtgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaattgaac 14199051  T

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Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 14896664 - 14896489
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||  |||||||||||||||||||||||||||||||||   |||||||| |        ||||||| |||||||||||||| ||||||||||    
T  14896664 caattttactagcatcttttaatagatattaacaaacagtttaaatgttaatcacaaga-tttttttacttatatttttaaataaataataaaaactaac 14896566  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14896565 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaat 14896489  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 14896418 - 14896378
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14896418 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 14896378  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 14199102 - 14199142
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  14199102 gttgaaatcagttaaaaaaatagttaccttatatgaagaaa 14199142  T

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Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 221
Target Start/End: Original strand, 16607905 - 16608080
Alignment:
Q  47 caattttactaaaatcttttaatagatattaacaaacagtttaaat---aatcacaacaannnnnnnacttataattttaaataaataagaaaaactaac 143  Q
    |||||||||||  |||||||||||||||||||||||||||||||||   |||||||| |        |||||||||||||||||||||| ||||||||||    
T  16607905 caattttactagcatcttttaatagatattaacaaacagtttaaatgttaatcacaaga-tttttttacttataattttaaataaataataaaaactaac 16608003  T
Q  144 ctcaaataatataatttgatgacaatgcagatcgaaaaagtagtagccagcagcaacaacaacttgtaataggaaatg 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  16608004 ctcaaataatataatttgatgacaatccagatcgaaaaagtagta-ccagcaacaacaacaacttgtaataggaaatg 16608080  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 16608150 - 16608190
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16608150 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 16608190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 44591 - 44551
Alignment:
Q  291 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 331  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44591 gttgaaatcaattaagaaaatagttaccttatatgaagaaa 44551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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