View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_high_9 (Length: 256)
Name: NF4594_high_9
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 50062012 - 50062256
Alignment:
| Q |
1 |
attaggagaatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttgannnnnnnnnnnnattctggttcttattc |
100 |
Q |
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| T |
50062012 |
attaggagaatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttgattttttctttttattctggttcttattc |
50062111 |
T |
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| Q |
101 |
gcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062112 |
gcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagcc |
50062211 |
T |
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| Q |
201 |
agtttccctgattaccatggcttcgaatgatatttgatctctgct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062212 |
agtttccctgattaccatggcttcgaatgatatttgatctctgct |
50062256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 44141434 - 44141679
Alignment:
| Q |
1 |
attaggagaatacatcttttgttttgccttcaaacgatagaatctgagctcatttagcttggcctttcttgannnnnnnnnnnn-attctggttcttatt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44141434 |
attaggagaatacatcttttgttttgccttcaaacgaaagaatctgagctcatttagcttggcctttcttgatttttttctttttattctggttcttatt |
44141533 |
T |
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| Q |
100 |
cgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141534 |
cgcagaaccaatatcatcaggcttgtatagcgagaaccgtacaacatcattttgggtcttcagttcaactgactcattacttgtgtatctggaaggtagc |
44141633 |
T |
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| Q |
200 |
cagtttccctgattaccatggcttcgaatgatatttgatctctgct |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141634 |
cagtttccctgattaccatggcttcgaatgatatttgatctctgct |
44141679 |
T |
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