View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_low_12 (Length: 245)
Name: NF4594_low_12
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 1537661 - 1537830
Alignment:
| Q |
10 |
aaaagaagcacatgataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaacagcat |
109 |
Q |
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| T |
1537661 |
aaaagaagcacatgataatcctgataatgatggaaacaagatggttgaaagccggaaattatatcaacacgcttgtgatgttgattctttggaacagcat |
1537760 |
T |
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| Q |
110 |
gctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagcg-ttgcaatcagaa |
178 |
Q |
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| T |
1537761 |
gctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagcgtttgcaatcagaa |
1537830 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 46641851 - 46641786
Alignment:
| Q |
81 |
cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaaca |
146 |
Q |
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| T |
46641851 |
cttgtgatgttgattctttggaaaaacaggctgatataaatctgaggagacaaagcactagaaaca |
46641786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 46173079 - 46172995
Alignment:
| Q |
81 |
cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc |
165 |
Q |
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| T |
46173079 |
cttgtgatgttggttctttggaacaacagcctgatataaatcccaggagacagagcactagaaacagaccgttgacagttagagc |
46172995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 165
Target Start/End: Original strand, 46630704 - 46630788
Alignment:
| Q |
81 |
cttgtgatgttgattctttggaacagcatgctgatataaatctctggagacaaatcactagaaacaaaccattgaaagttagagc |
165 |
Q |
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| T |
46630704 |
cttgtgatgttggttcgttggaacaacagcctgatataaatccgaggagacagagcaatagaaaaagaccattgacagttagagc |
46630788 |
T |
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