View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_low_18 (Length: 225)
Name: NF4594_low_18
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 23086492 - 23086296
Alignment:
| Q |
15 |
caaagggcaatcttgaatttttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaaactacttcttcctcttcaccttgattt |
114 |
Q |
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| T |
23086492 |
caaaggacaatcttgaatttttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaaactacatcttcctcttcaccttgtttt |
23086393 |
T |
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| Q |
115 |
gaaaggatcggcttctcactaatggccacaaccttgtaagttccggttgaaatatcacaaccaaaagtgaacttgtaaggcttcgatagatatatat |
211 |
Q |
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| T |
23086392 |
gaaagaaccggcttctcactaatggccacaaccttgtaagttccggttgaaatatcacaaccaaaagtgaacttgtaaggcttcgatagatatatat |
23086296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 19747061 - 19747114
Alignment:
| Q |
34 |
tttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaa |
87 |
Q |
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| T |
19747061 |
tttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaa |
19747114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 19747159 - 19747201
Alignment:
| Q |
147 |
cttgtaagttccggttgaaatatcacaaccaaaagtgaacttg |
189 |
Q |
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| T |
19747159 |
cttgtaagttcctgttgaaatatcacaaccaaaaccgaacttg |
19747201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 23847605 - 23847651
Alignment:
| Q |
140 |
ccacaaccttgtaagttccggttgaaatatcacaaccaaaagtgaac |
186 |
Q |
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| T |
23847605 |
ccaccaccttgtaagttccagttaaaatgtcacaaccaaaagtgaac |
23847651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 11345549 - 11345589
Alignment:
| Q |
145 |
accttgtaagttccggttgaaatatcacaaccaaaagtgaa |
185 |
Q |
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| T |
11345549 |
accttgtaagtttcggttaaaatgtcacaaccaaaagtgaa |
11345589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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