View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_low_2 (Length: 484)

Name: NF4594_low_2
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_low_2
NF4594_low_2
[»] chr5 (1 HSPs)
chr5 (8-470)||(23086296-23086758)
[»] chr7 (6 HSPs)
chr7 (53-134)||(26256625-26256706)
chr7 (58-129)||(26217822-26217893)
chr7 (58-129)||(26230072-26230143)
chr7 (53-134)||(26237464-26237545)
chr7 (53-152)||(24016621-24016719)
chr7 (196-237)||(19604745-19604786)
[»] chr3 (3 HSPs)
chr3 (8-123)||(36339976-36340091)
chr3 (53-123)||(25915436-25915506)
chr3 (53-123)||(25901418-25901488)
[»] chr6 (4 HSPs)
chr6 (8-134)||(19746788-19746914)
chr6 (293-346)||(19747061-19747114)
chr6 (406-448)||(19747159-19747201)
chr6 (53-129)||(33568839-33568915)
[»] chr1 (1 HSPs)
chr1 (53-114)||(17953800-17953861)
[»] chr4 (1 HSPs)
chr4 (399-445)||(23847605-23847651)
[»] scaffold0707 (1 HSPs)
scaffold0707 (53-129)||(5233-5309)
[»] chr8 (1 HSPs)
chr8 (404-444)||(11345549-11345589)


Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 470
Target Start/End: Complemental strand, 23086758 - 23086296
Alignment:
Q  8 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23086758 aagcaaaggcagtccttcagaacatgaagagatggctgatattctggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgata 23086659  T
Q  108 gatcaagcgaaacaatgacaaactgcttagcattagtgatagacttccaaccatgttcataagacggcataaggaaatcggggagacacaaccagttaac 207  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23086658 gatcaagcgaaacaatgacaaactgcttagcattagtaatagacttccaaccatgttcataagacggcataaggaaatcggggagacacaaccaattaac 23086559  T
Q  208 agtaccattcacatgcacaccattattaatccgattaatgagaatattcattacacaaaccggaatcaaagggcaatcttgaatttttctccaacaatta 307  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  23086558 agtaccattcaaatgcacgccattattaattcgattaatgagaatattcattacacaaacaggaatcaaaggacaatcttgaatttttctccaacaatta 23086459  T
Q  308 tcaccaaaactgaaaattctgacctcacatttccatgaaactacttcttcctcttcaccttgatttgaaaggatcggcttctcactaatggccacaacct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  23086458 tcaccaaaactgaaaattctgacctcacatttccatgaaactacatcttcctcttcaccttgttttgaaagaaccggcttctcactaatggccacaacct 23086359  T
Q  408 tgtaagttccggttgaaatatcacaaccaaaagtgaacttgtaaggcttcgatagatatatat 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23086358 tgtaagttccggttgaaatatcacaaccaaaagtgaacttgtaaggcttcgatagatatatat 23086296  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 26256706 - 26256625
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  26256706 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaattgct 26256625  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 26217893 - 26217822
Alignment:
Q  58 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26217893 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26217822  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 26230143 - 26230072
Alignment:
Q  58 ctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 129  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26230143 ctcatcaaagccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaataatcacaaa 26230072  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 26237545 - 26237464
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgct 134  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||  || |||||||||||||||| ||| ||||| ||||    
T  26237545 ggcacctcatcaaaaccttgaggcaacaacaactgtttgtatgtctttgtcgaaagatcaagcgaaagaatcacaaattgct 26237464  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 24016719 - 24016621
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaactgcttagcattagtgatagact 152  Q
    |||||||| ||||| ||||||| |||||  |||||||||||||||||||| ||||||||||| |||||||| ||||| || ||| |||| || |||||||    
T  24016719 ggcacctcgtcaaatccttgag-cagcagaaactgcttgtatgtctccgtcgaaagatcaagagaaacaatcacaaattgtttaacattggtaatagact 24016621  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 19604745 - 19604786
Alignment:
Q  196 caaccagttaacagtaccattcacatgcacaccattattaat 237  Q
    ||||||||||| ||||||| |||||| |||||||||||||||    
T  19604745 caaccagttaagagtaccactcacatacacaccattattaat 19604786  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 36340091 - 36339976
Alignment:
Q  8 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 107  Q
    ||||||||||||||| |||||||  |||||||||||| |      |||||||| | |||||||  ||| ||||| |||||| ||||||||||||| ||||    
T  36340091 aagcaaaggcagtccatcagaacccgaagagatggctcaacgcatggcacctccttaaaacctgcaggaagcaaaaactgcctgtatgtctccgtcgaaa 36339992  T
Q  108 gatcaagcgaaacaat 123  Q
    ||||||||||||||||    
T  36339991 gatcaagcgaaacaat 36339976  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 25915436 - 25915506
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 123  Q
    |||||||| ||||||||  ||||||||||||||||  |||||| ||| || || |||||||||||||||||    
T  25915436 ggcacctcgtcaaaaccccgaggcagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25915506  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 25901418 - 25901488
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaat 123  Q
    |||||||| ||||||||  |||| |||||||||||  |||||| ||| || || |||||||||||||||||    
T  25901418 ggcacctcgtcaaaaccccgaggtagcaacaactgagtgtatgactcagtggacagatcaagcgaaacaat 25901488  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 19746788 - 19746914
Alignment:
Q  8 aagcaaaggcagtccttcagaacatgaagagatggctgatattccggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaa 107  Q
    ||||||||||||||| ||||||||||||||| ||||||| | |  || || |||||||||||    |||||||| || ||  |||||||||| || ||||    
T  19746788 aagcaaaggcagtccatcagaacatgaagagttggctgaaagtgtgggacttcatcaaaaccaaatggcagcaaaaattgtgtgtatgtctcagtcgaaa 19746887  T
Q  108 gatcaagcgaaacaatgacaaactgct 134  Q
    ||||||| |||||||| ||||| ||||    
T  19746888 gatcaagggaaacaatcacaaattgct 19746914  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 19747061 - 19747114
Alignment:
Q  293 tttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaa 346  Q
    |||||||||||||||||||  ||||||||||||||||||| || | ||||||||    
T  19747061 tttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaa 19747114  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 448
Target Start/End: Original strand, 19747159 - 19747201
Alignment:
Q  406 cttgtaagttccggttgaaatatcacaaccaaaagtgaacttg 448  Q
    |||||||||||| |||||||||||||||||||||  |||||||    
T  19747159 cttgtaagttcctgttgaaatatcacaaccaaaaccgaacttg 19747201  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 33568915 - 33568839
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 129  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  33568915 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 33568839  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 17953800 - 17953861
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaag 114  Q
    |||||||||||||||||||||||||| |||| || |||| ||||||| || |||||||||||    
T  17953800 ggcacctcatcaaaaccttgaggcagtaacagcttcttgaatgtctctgtcgaaagatcaag 17953861  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 445
Target Start/End: Original strand, 23847605 - 23847651
Alignment:
Q  399 ccacaaccttgtaagttccggttgaaatatcacaaccaaaagtgaac 445  Q
    |||| |||||||||||||| ||| |||| ||||||||||||||||||    
T  23847605 ccaccaccttgtaagttccagttaaaatgtcacaaccaaaagtgaac 23847651  T

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Target: scaffold0707 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 5309 - 5233
Alignment:
Q  53 ggcacctcatcaaaaccttgaggcagcaacaactgcttgtatgtctccgttgaaagatcaagcgaaacaatgacaaa 129  Q
    |||||||||| |||||| | ||| ||||| || ||  ||||||||||||  ||||||||||| |||||||| |||||    
T  5309 ggcacctcattaaaacccttaggaagcaaaaattgtgtgtatgtctccggcgaaagatcaagggaaacaatcacaaa 5233  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 11345549 - 11345589
Alignment:
Q  404 accttgtaagttccggttgaaatatcacaaccaaaagtgaa 444  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  11345549 accttgtaagtttcggttaaaatgtcacaaccaaaagtgaa 11345589  T

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