View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_low_3 (Length: 483)

Name: NF4594_low_3
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_low_3
NF4594_low_3
[»] chr5 (2 HSPs)
chr5 (3-423)||(1537850-1538263)
chr5 (425-468)||(39949090-39949133)
[»] chr8 (3 HSPs)
chr8 (425-468)||(41741095-41741138)
chr8 (327-372)||(12655918-12655963)
chr8 (309-369)||(14228706-14228766)
[»] chr7 (6 HSPs)
chr7 (425-468)||(12642600-12642643)
chr7 (425-468)||(42709226-42709269)
chr7 (429-468)||(43702640-43702679)
chr7 (6-57)||(46620361-46620412)
chr7 (8-91)||(46641619-46641701)
chr7 (309-365)||(29763833-29763889)
[»] chr3 (1 HSPs)
chr3 (425-468)||(33516698-33516741)
[»] chr1 (4 HSPs)
chr1 (425-468)||(43669651-43669694)
chr1 (425-468)||(46900151-46900194)
chr1 (309-370)||(16234306-16234367)
chr1 (309-370)||(29706714-29706776)
[»] chr2 (2 HSPs)
chr2 (309-371)||(4114433-4114495)
chr2 (309-371)||(18508075-18508137)
[»] chr6 (1 HSPs)
chr6 (309-377)||(16368058-16368127)
[»] chr4 (1 HSPs)
chr4 (436-468)||(25107618-25107650)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 3 - 423
Target Start/End: Original strand, 1537850 - 1538263
Alignment:
Q  3 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcgtcggtctttgttaagatcatgcgaatgcatatggatatgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||      ||    
T  1537850 agcccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcttcg-tctttgttaagatcatgggaatgcatat------gg 1537942  T
Q  103 tggtgttacctaaatatttgtaagcaacttagttaggttaaaagagtttctggcttttgaaattggtttggaatgaactgatgcatctcctgccagatga 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1537943 tggtgttacctaaatatttctaagcaacttagttaggttaaaagagtttctggcttttgaaattggtttggaatgtactgatgcatctcctgccagatga 1538042  T
Q  203 ctagacatacccacacaattcattaaattcagctcttgtgaagaataggtagatgtcatacaataaagtatgagcaacaaggatgtttataacacaataa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1538043 ctagacatacccacacaattcattaaattcagctcttgtgaagaataggtagatgtcatacaataaagtatgagcaacaagtatgtttataacacaataa 1538142  T
Q  303 ctcttggtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttcttaaattaattaataactattctgctatttattt 402  Q
    | ||| |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1538143 cccttagtattagaaagaaggttgtacaaaagttatcataaaattgttcaacaaatatcatttttcttaaattaattaataactattcttctatttattt 1538242  T
Q  403 tcttatacacaactttattat 423  Q
    |||||||||||||||||||||    
T  1538243 tcttatacacaactttattat 1538263  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 468
Target Start/End: Complemental strand, 39949133 - 39949090
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  39949133 aaattggatcacctgcagcactttctctcctgcactccctgctg 39949090  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Complemental strand, 41741138 - 41741095
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41741138 aaattggatcatctgcagcactttctctcctgcactccctgctg 41741095  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 12655963 - 12655918
Alignment:
Q  327 tacaaaagttattataaaattgttcaacaaatatcatttttcttaa 372  Q
    |||||||||||||||||||| |||  ||||||||||||| ||||||    
T  12655963 tacaaaagttattataaaatggttgtacaaatatcatttctcttaa 12655918  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 14228766 - 14228706
Alignment:
Q  309 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttct 369  Q
    |||||||| |||| ||| |||||||||||| | ||||| |||  |||||||||||||||||    
T  14228766 gtatgagagagaaagttgtacaaaagttatcacaaaatagttgtacaaatatcatttttct 14228706  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Complemental strand, 12642643 - 12642600
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12642643 aaattggatcatctgcagcactttctctcctgcactccctgctg 12642600  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 42709226 - 42709269
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42709226 aaattggatcatctgcagcactttctctcctgcactccctgctg 42709269  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 429 - 468
Target Start/End: Complemental strand, 43702679 - 43702640
Alignment:
Q  429 tggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  43702679 tggatcatctgcagcattttctctcctgcactccctgctg 43702640  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 46620361 - 46620412
Alignment:
Q  6 ccaagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatg 57  Q
    |||||||||||||||||||||||||||| ||||||   ||||||||| ||||    
T  46620361 ccaagatcctttcaatccttgccgcaaggctcgtacatgaggcaaaataatg 46620412  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 46641701 - 46641619
Alignment:
Q  8 aagatcctttcaatccttgccgcaagcctcgtatgagaggcaaaacaatgatgcgtcggtctttgttaagatcatgcgaatgca 91  Q
    |||||||||||||||||||| ||||| ||| ||  |||||  |||||||| |||||| ||| ||||| |||||||| |||||||    
T  46641701 aagatcctttcaatccttgcggcaaggctcatacaagaggtgaaacaatgctgcgtc-gtcattgttcagatcatgggaatgca 46641619  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 29763889 - 29763833
Alignment:
Q  309 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcattt 365  Q
    ||||||||||||| ||| |||||||||||| | ||||| |||  |||||||||||||    
T  29763889 gtatgagaaagaaagttgtacaaaagttatcacaaaatggttgtacaaatatcattt 29763833  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 33516698 - 33516741
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33516698 aaattggatcatctgcagcactttctctcctgcactccctgctg 33516741  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 43669651 - 43669694
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43669651 aaattggatcatctgcagcactttctctcctgcactccctgctg 43669694  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 46900151 - 46900194
Alignment:
Q  425 aaattggatcatctgcagcactttctctcctgcactccctgctg 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  46900151 aaattggatcatctgcagcactttctctcctgcactccctgctg 46900194  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 16234306 - 16234367
Alignment:
Q  309 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctt 370  Q
    |||||||| ||||||||||||||||||| | ||||||| | |  ||||||||||||||||||    
T  16234306 gtatgagagagaaggttatacaaaagttgtcataaaatggatgtacaaatatcatttttctt 16234367  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 370
Target Start/End: Original strand, 29706714 - 29706776
Alignment:
Q  309 gtatgagaaagaaggttata-caaaagttattataaaattgttcaacaaatatcatttttctt 370  Q
    |||||||| ||||||||||| |||||||||| ||||||| |||  ||||||||||||| ||||    
T  29706714 gtatgagagagaaggttataacaaaagttatcataaaatggttgtacaaatatcatttctctt 29706776  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 4114433 - 4114495
Alignment:
Q  309 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctta 371  Q
    |||||||| |||| |||||||||||||||| ||||||| |||  |||||||| |||| |||||    
T  4114433 gtatgagagagaaagttatacaaaagttataataaaatggttgtacaaatataatttctctta 4114495  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 18508137 - 18508075
Alignment:
Q  309 gtatgagaaagaaggttatacaaaagttattataaaattgttcaacaaatatcatttttctta 371  Q
    |||||||| |||| |||||||||||||||| ||||||| | |  ||||||||||||| |||||    
T  18508137 gtatgagagagaatgttatacaaaagttatcataaaatggatgtacaaatatcatttctctta 18508075  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 16368058 - 16368127
Alignment:
Q  309 gtatgagaaagaaggttat-acaaaagttattataaaattgttcaacaaatatcatttttcttaaattaa 377  Q
    ||||||||||||| ||| | |||||| |||||||||||| |||  ||||||||||||| |||||| ||||    
T  16368058 gtatgagaaagaaagttgttacaaaaattattataaaatggttgtacaaatatcatttctcttaatttaa 16368127  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 468
Target Start/End: Complemental strand, 25107650 - 25107618
Alignment:
Q  436 tctgcagcactttctctcctgcactccctgctg 468  Q
    |||||| ||||||||||||||||||||||||||    
T  25107650 tctgcaacactttctctcctgcactccctgctg 25107618  T

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