View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_low_5 (Length: 363)

Name: NF4594_low_5
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_low_5
NF4594_low_5
[»] chr3 (4 HSPs)
chr3 (22-348)||(51199978-51200304)
chr3 (60-110)||(52708625-52708675)
chr3 (60-108)||(22508738-22508786)
chr3 (60-112)||(45267304-45267356)
[»] chr4 (1 HSPs)
chr4 (60-110)||(19674415-19674465)
[»] chr6 (1 HSPs)
chr6 (60-121)||(21165236-21165297)
[»] chr1 (6 HSPs)
chr1 (61-110)||(48334141-48334190)
chr1 (60-110)||(9774896-9774946)
chr1 (64-110)||(24427381-24427427)
chr1 (60-110)||(37396848-37396898)
chr1 (60-110)||(50164404-50164454)
chr1 (60-120)||(27264224-27264284)
[»] chr8 (5 HSPs)
chr8 (60-116)||(10718456-10718512)
chr8 (60-110)||(10717122-10717172)
chr8 (60-110)||(36588223-36588273)
chr8 (60-110)||(39440430-39440480)
chr8 (60-109)||(3483635-3483684)
[»] chr7 (3 HSPs)
chr7 (61-120)||(39619800-39619859)
chr7 (61-110)||(24197112-24197161)
chr7 (60-108)||(11217079-11217127)
[»] scaffold0517 (1 HSPs)
scaffold0517 (60-110)||(10316-10366)
[»] scaffold0095 (1 HSPs)
scaffold0095 (60-110)||(42763-42813)
[»] scaffold0001 (1 HSPs)
scaffold0001 (60-110)||(119594-119644)
[»] chr2 (1 HSPs)
chr2 (60-110)||(1777470-1777520)


Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 51199978 - 51200304
Alignment:
Q  22 gaaaatgctagagggcttnnnnnnntagacattacaacgaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 121  Q
    ||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51199978 gaaaatgctagagggcttaaaaaaatagacattacagcgaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttaagcttatatataaa 51200077  T
Q  122 aagatagtttatatgattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaattgaaataaacgatggaggtcgttttattgtgaga 221  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  51200078 aagatagtttatataattttgatttggatttcttgttgtaattgtgtaacgcaattattgtccaatcgaaataaacgatcgaggtcgttttattgtgaga 51200177  T
Q  222 aatagagtttaaaatataaactttccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaagttgacctgc 321  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51200178 aatagagtttaaaatataaactgtccgatctcaaatcaatgattgagaaccacctgaaaacactataacaatgaatacaggtccatctaagttgacctgt 51200277  T
Q  322 taaaaatccatgtattattcgtctgtg 348  Q
    |||||||||||||||||||||| ||||    
T  51200278 taaaaatccatgtattattcgtttgtg 51200304  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 52708625 - 52708675
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  52708625 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 52708675  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 22508786 - 22508738
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 108  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||    
T  22508786 gaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 45267356 - 45267304
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagctt 112  Q
    ||||||||||| ||||||||||||||| | ||| ||||  |||||||||||||    
T  45267356 gaccaaaactcaaactcgctatatttgcagggatcaaaaacatattttagctt 45267304  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 19674465 - 19674415
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||||||||    
T  19674465 gaccaaaactcaaactcgctatatttgcaaggaccaaaagcatattttagc 19674415  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 21165297 - 21165236
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataaa 121  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||  |||||||||    
T  21165297 gaccaaaacacaaactcgctatatttgcagggaccaaaagcatattttagccaatatataaa 21165236  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 48334141 - 48334190
Alignment:
Q  61 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    |||||||||| || |||||||||||||| |||||||| ||||||||||||    
T  48334141 accaaaactcaaattcgctatatttgtagggaccaaaagcatattttagc 48334190  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 9774896 - 9774946
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  9774896 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 9774946  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 24427381 - 24427427
Alignment:
Q  64 aaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24427381 aaaactcaaactcgctatatttgtagggaccaaaaacatattttagc 24427427  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 37396848 - 37396898
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  37396848 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 37396898  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 50164454 - 50164404
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  50164454 gaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagc 50164404  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 27264224 - 27264284
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 120  Q
    ||||||||| | ||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  27264224 gaccaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctataaataa 27264284  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 10718456 - 10718512
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatat 116  Q
    ||||||||| | ||||||||||||||| | |||||||| |||||||||||| |||||    
T  10718456 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctatat 10718512  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 10717172 - 10717122
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  10717172 gaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagc 10717122  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 36588273 - 36588223
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||| | ||||||||||||||| | |||||||| ||||||||||||    
T  36588273 gaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagc 36588223  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 39440430 - 39440480
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  39440430 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 39440480  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 3483684 - 3483635
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttag 109  Q
    ||||||||||| ||||||||||||||| | ||||||||  ||||||||||    
T  3483684 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttag 3483635  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 39619800 - 39619859
Alignment:
Q  61 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagcttatatataa 120  Q
    |||||||| | ||||||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  39619800 accaaaacccaaactcgccatatttgcatggaccaaaagcatattttagcctatttataa 39619859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 24197112 - 24197161
Alignment:
Q  61 accaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    |||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  24197112 accaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 24197161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 11217079 - 11217127
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatatttta 108  Q
    |||||||| || ||||||||||||||| | |||||||| ||||||||||    
T  11217079 gaccaaaattcaaactcgctatatttgcagggaccaaaagcatatttta 11217127  T

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Target: scaffold0517 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 10366 - 10316
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  10366 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 10316  T

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Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 42763 - 42813
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| ||||||| ||||||| | |||||||| ||||||||||||    
T  42763 gaccaaaactcaaactcgccatatttgcaaggaccaaaagcatattttagc 42813  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 119644 - 119594
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| || |||||||||||| | |||||||| ||||||||||||    
T  119644 gaccaaaactcaaattcgctatatttgcagggaccaaaagcatattttagc 119594  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 1777520 - 1777470
Alignment:
Q  60 gaccaaaactcgaactcgctatatttgtatggaccaaatgcatattttagc 110  Q
    ||||||||||| ||||||||||||||| | ||||||||  |||||||||||    
T  1777520 gaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagc 1777470  T

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