View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4594_low_8 (Length: 324)

Name: NF4594_low_8
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4594_low_8
NF4594_low_8
[»] chr4 (34 HSPs)
chr4 (1-308)||(50061662-50061969)
chr4 (232-310)||(32818402-32818480)
chr4 (213-309)||(49138796-49138891)
chr4 (149-309)||(35064962-35065115)
chr4 (232-309)||(26617443-26617520)
chr4 (208-308)||(9064182-9064282)
chr4 (146-206)||(21691349-21691409)
chr4 (153-309)||(46344865-46345013)
chr4 (234-308)||(55186996-55187070)
chr4 (239-297)||(11271582-11271641)
chr4 (234-309)||(30889764-30889839)
chr4 (232-289)||(25319022-25319080)
chr4 (234-308)||(41370044-41370118)
chr4 (208-290)||(43868087-43868169)
chr4 (255-308)||(8604656-8604709)
chr4 (223-308)||(9134576-9134661)
chr4 (232-308)||(18597014-18597091)
chr4 (145-284)||(49138894-49139025)
chr4 (141-182)||(56013913-56013954)
chr4 (235-310)||(2206375-2206451)
chr4 (237-309)||(25927288-25927360)
chr4 (232-308)||(30472909-30472985)
chr4 (240-272)||(33843661-33843693)
chr4 (223-306)||(39733674-39733756)
chr4 (145-308)||(2635058-2635214)
chr4 (145-202)||(33456269-33456326)
chr4 (145-206)||(33843586-33843647)
chr4 (146-206)||(16551853-16551913)
chr4 (211-275)||(37353400-37353464)
chr4 (211-275)||(37365374-37365438)
chr4 (254-310)||(43571475-43571531)
chr4 (220-272)||(52061404-52061456)
chr4 (213-281)||(53913638-53913706)
chr4 (232-295)||(54705437-54705501)
[»] chr8 (20 HSPs)
chr8 (1-308)||(44141084-44141391)
chr8 (223-308)||(37684371-37684456)
chr8 (229-309)||(32927864-32927944)
chr8 (170-308)||(13384688-13384819)
chr8 (234-309)||(4662936-4663011)
chr8 (234-296)||(41318825-41318887)
chr8 (243-308)||(38537392-38537457)
chr8 (223-308)||(38868464-38868549)
chr8 (208-268)||(26668503-26668563)
chr8 (235-309)||(10367973-10368047)
chr8 (232-308)||(36200166-36200242)
chr8 (255-309)||(15677849-15677903)
chr8 (257-309)||(35494990-35495042)
chr8 (208-272)||(35525363-35525427)
chr8 (145-204)||(10367896-10367955)
chr8 (255-309)||(26100179-26100233)
chr8 (255-309)||(32994275-32994329)
chr8 (240-292)||(1836262-1836315)
chr8 (232-309)||(16972097-16972174)
chr8 (232-272)||(4950459-4950499)
[»] scaffold0168 (1 HSPs)
scaffold0168 (145-308)||(31721-31877)
[»] chr6 (21 HSPs)
chr6 (139-309)||(5724663-5724826)
chr6 (175-308)||(3481964-3482097)
chr6 (145-308)||(4910803-4910959)
chr6 (232-308)||(6654124-6654200)
chr6 (232-294)||(16540082-16540144)
chr6 (149-308)||(25195400-25195550)
chr6 (242-299)||(7952752-7952809)
chr6 (232-306)||(765422-765496)
chr6 (255-308)||(6895984-6896037)
chr6 (232-308)||(2234490-2234566)
chr6 (233-309)||(26280581-26280657)
chr6 (232-309)||(10400728-10400805)
chr6 (237-309)||(852512-852584)
chr6 (232-308)||(1485180-1485256)
chr6 (175-277)||(2008403-2008498)
chr6 (145-205)||(31710512-31710572)
chr6 (234-265)||(24974192-24974223)
chr6 (234-272)||(35098244-35098282)
chr6 (236-292)||(10564974-10565031)
chr6 (232-283)||(2234272-2234324)
chr6 (256-284)||(14993077-14993105)
[»] chr2 (19 HSPs)
chr2 (145-309)||(30503104-30503261)
chr2 (145-204)||(33047683-33047742)
chr2 (232-309)||(2002728-2002805)
chr2 (248-309)||(42740968-42741029)
chr2 (232-284)||(10644578-10644630)
chr2 (227-310)||(22535968-22536051)
chr2 (232-296)||(31453358-31453422)
chr2 (236-294)||(16518758-16518816)
chr2 (238-309)||(42982523-42982596)
chr2 (210-299)||(11504104-11504193)
chr2 (232-267)||(1976940-1976975)
chr2 (255-306)||(43501123-43501174)
chr2 (234-272)||(680347-680385)
chr2 (231-309)||(21659693-21659771)
chr2 (233-275)||(32777946-32777988)
chr2 (233-267)||(33502223-33502257)
chr2 (223-308)||(3352042-3352127)
chr2 (232-292)||(37561681-37561742)
chr2 (208-308)||(12037012-12037112)
[»] chr5 (25 HSPs)
chr5 (240-309)||(9818717-9818786)
chr5 (149-308)||(11647981-11648133)
chr5 (255-307)||(6951340-6951392)
chr5 (208-284)||(27374349-27374425)
chr5 (237-308)||(14299310-14299381)
chr5 (250-308)||(38845436-38845494)
chr5 (232-309)||(36639912-36639989)
chr5 (145-202)||(38845644-38845701)
chr5 (237-297)||(13171806-13171866)
chr5 (233-285)||(43268467-43268519)
chr5 (234-308)||(42858085-42858159)
chr5 (255-308)||(18851116-18851169)
chr5 (145-206)||(18851211-18851272)
chr5 (232-297)||(34250396-34250461)
chr5 (145-299)||(22226279-22226426)
chr5 (232-308)||(1105414-1105492)
chr5 (237-309)||(3970433-3970506)
chr5 (213-270)||(5468729-5468786)
chr5 (260-309)||(8121547-8121596)
chr5 (240-269)||(22572511-22572540)
chr5 (213-262)||(29922582-29922631)
chr5 (232-297)||(32980519-32980583)
chr5 (223-308)||(36290001-36290086)
chr5 (253-309)||(3738141-3738197)
chr5 (234-297)||(42439662-42439726)
[»] chr1 (20 HSPs)
chr1 (145-297)||(28083933-28084078)
chr1 (233-309)||(31362238-31362310)
chr1 (232-297)||(6021779-6021844)
chr1 (244-309)||(48549045-48549110)
chr1 (234-305)||(3016140-3016210)
chr1 (231-309)||(1514317-1514395)
chr1 (259-309)||(11049252-11049302)
chr1 (141-308)||(36780150-36780311)
chr1 (237-299)||(50571264-50571326)
chr1 (264-309)||(7524120-7524165)
chr1 (232-309)||(51500867-51500939)
chr1 (237-309)||(10324971-10325043)
chr1 (215-309)||(3416038-3416132)
chr1 (255-309)||(7790675-7790729)
chr1 (258-308)||(30557505-30557555)
chr1 (233-285)||(5268194-5268247)
chr1 (255-308)||(28287370-28287423)
chr1 (223-308)||(34387727-34387812)
chr1 (223-308)||(47321941-47322025)
chr1 (232-281)||(47053385-47053438)
[»] chr7 (14 HSPs)
chr7 (237-292)||(15903580-15903635)
chr7 (213-308)||(27571818-27571913)
chr7 (208-305)||(41386852-41386949)
chr7 (237-309)||(40491558-40491630)
chr7 (213-308)||(22195820-22195915)
chr7 (232-289)||(36270955-36271012)
chr7 (232-292)||(40422767-40422828)
chr7 (232-308)||(44856843-44856917)
chr7 (232-308)||(5489880-5489956)
chr7 (234-306)||(28725088-28725160)
chr7 (233-309)||(30182329-30182404)
chr7 (234-272)||(45004997-45005035)
chr7 (255-296)||(17111855-17111896)
chr7 (145-202)||(46325570-46325627)
[»] chr3 (21 HSPs)
chr3 (213-308)||(54596774-54596869)
chr3 (232-296)||(7717367-7717431)
chr3 (237-308)||(25359608-25359679)
chr3 (220-299)||(40736580-40736659)
chr3 (143-206)||(52141374-52141437)
chr3 (232-309)||(32523373-32523451)
chr3 (145-202)||(1290676-1290733)
chr3 (232-308)||(35058336-35058412)
chr3 (237-309)||(37335067-37335139)
chr3 (232-299)||(1441424-1441491)
chr3 (233-309)||(44771670-44771746)
chr3 (215-263)||(48410891-48410939)
chr3 (233-272)||(30301069-30301108)
chr3 (232-291)||(41115413-41115472)
chr3 (145-202)||(3845245-3845302)
chr3 (255-308)||(35058065-35058118)
chr3 (235-308)||(35264445-35264518)
chr3 (232-272)||(38022410-38022451)
chr3 (242-307)||(40147885-40147950)
chr3 (145-202)||(52363960-52364017)
chr3 (236-308)||(44958640-44958712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (146-202)||(17322-17378)
[»] scaffold0197 (1 HSPs)
scaffold0197 (145-206)||(31544-31605)
[»] scaffold0024 (1 HSPs)
scaffold0024 (236-309)||(23626-23699)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 50061969 - 50061662
Alignment:
Q  1 ctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttactttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50061969 ctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttactttt 50061870  T
Q  101 aggacaatttttcccgtttgcttgtattcttgttcgactttgtatatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattga 200  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  50061869 aggacaattttacccgtttgcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattga 50061770  T
Q  201 ttctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  50061769 ttctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagag 50061670  T
Q  301 ttgatttt 308  Q
    ||||||||    
T  50061669 ttgatttt 50061662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 32818480 - 32818402
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttttg 310  Q
    |||||||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||| ||||||||||    
T  32818480 agtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttg 32818402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 309
Target Start/End: Complemental strand, 49138891 - 49138796
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||| || ||||| || |||| ||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||||    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgattctaaaattgattttt 49138796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 309
Target Start/End: Original strand, 35064962 - 35065115
Alignment:
Q  149 tttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 248  Q
    ||||||||| ||||| ||||   ||||||||||| ||||||| ||||||||||| |||       ||| | || ||| | || |||||||||||||||||    
T  35064962 tttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatga-------catttttggttgctttcgagtagaattgattttgc 35065054  T
Q  249 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||| | |||||||| ||||||||| ||| ||||||  |||||||||||||| |||||||||    
T  35065055 ctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgattttt 35065115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 26617443 - 26617520
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||||| || | |||||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgattttt 26617520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 9064182 - 9064282
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 307  Q
    ||||||||||| || |||||||| | ||||||| | |||||| ||| |||||||||||||||||  ||| |||||||  ||||||||||||| |||||||    
T  9064182 ttctaacatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T
Q  308 t 308  Q
    |    
T  9064282 t 9064282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 21691409 - 21691349
Alignment:
Q  146 atgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    |||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||    
T  21691409 atgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctga 21691349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 309
Target Start/End: Complemental strand, 46345013 - 46344865
Alignment:
Q  153 gttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctcc 252  Q
    ||||| ||||||||||  |||||||||||| ||||||| || |||| |||||||       ||||| || ||| | || |||| ||||||||||||||||    
T  46345013 gttccacttctagagggcccaaaattgattatggaggtgtataattaattctga-------catgtttggttgctttcaagtataattgattttgcctcc 46344921  T
Q  253 aaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    | |||| ||||||||||||||||| ||||  | ||||||||||| ||  ||||||||    
T  46344920 ataatt-attctacttgaagttagaatttccagcttttgattctggaagtgattttt 46344865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 55187070 - 55186996
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||| ||| | ||| || |||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||    
T  55187070 tagaattaattctaccttcagaattgattctacttgaagttaggatttgtaacttttaattatagaattgatttt 55186996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 11271641 - 11271582
Alignment:
Q  239 ttgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 297  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||| ||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagtcta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 30889764 - 30889839
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||| ||| | ||||||||||||||| | ||| ||||||||  |||||||| |||| |||||||||    
T  30889764 tagaattgattttgtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattgattttt 30889839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 25319022 - 25319080
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttt 289  Q
    |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||    
T  25319022 agtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 41370118 - 41370044
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||||  ||| | | ||||||||||||||||||||||||| ||  |||| |||||||| ||||||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctagacttgatttt 41370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 43868087 - 43868169
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtacctttt 290  Q
    ||||||||||| || ||| | || ||||||||| |||||| ||||| ||||||||||| ||||| ||| |||||||| |||||    
T  43868087 ttctaacatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagctttt 43868169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 8604709 - 8604656
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||||||||| || |||||||| |||| ||||||||| ||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgatttt 8604656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 9134576 - 9134661
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||| || ||| ||||||||||| | |||| ||||||| |||||||||| ||  ||||||| ||||||||| |||| ||||||||    
T  9134576 ttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgatttt 9134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 18597014 - 18597091
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||| |||||||||| |||||| |||||||||| |||||||| ||  ||||| |||||||||||||| | ||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattctataattgatttt 18597091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 49139025 - 49138894
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    ||||||||||||| |||||| ||   |||||||||||| | ||||| ||||||||||||||       |||||| || ||||| || |||| ||||||||    
T  49139025 tatgtttggttccacttctaaagtggccaaaattgattctagaggtgtagaattgattctg-------acatgtttggttgttttcaagtaaaattgatt 49138933  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgta 284  Q
     ||||| |||  ||| |||||||||||| |||||||||||    
T  49138932 gtgcctgcaagcttg-ttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 56013954 - 56013913
Alignment:
Q  141 tgtatatgtttggttcctcttctagaggaaccaaaattgatt 182  Q
    |||||||||||||||||||||||||| |||||| ||||||||    
T  56013954 tgtatatgtttggttcctcttctagaagaaccataattgatt 56013913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 2206451 - 2206375
Alignment:
Q  235 agaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttgattctagagttgatttttg 310  Q
    |||||||||||| |||||||||||||||||| ||||||| ||  | ||| | |||||||||||||  ||||||||||    
T  2206451 agaattgatttttcctccaaaattgattctagcttgaagctaaaaattggagcttttgattctaggattgatttttg 2206375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 25927288 - 25927360
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||| |||||||| ||||||||||| ||| ||||| |||||||| ||| |||||  ||| |||||||||    
T  25927288 aattgattatgcctccataattgattctatttggagttaagatttgtagcttatgatttcagaattgattttt 25927360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 30472909 - 30472985
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||| |||||  || ||||||||||| ||||| ||||||| |||||||  |||||||| |||| ||||||||    
T  30472909 agtagaattaattttatcttcaaaattgattttacttcaagttagaatttgtagtttttgattttagaattgatttt 30472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 33843661 - 33843693
Alignment:
Q  240 tgattttgcctccaaaattgattctacttgaag 272  Q
    |||||||||||||||||||||||||||||||||    
T  33843661 tgattttgcctccaaaattgattctacttgaag 33843693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 39733756 - 39733674
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 306  Q
    ||||| || |||| |||| ||| |||||||| ||||||||||||||| |||||  ||||||| ||||||||| |||| ||||||    
T  39733756 ttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaattgatt 39733674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 2635058 - 2635214
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    ||||||||||| | ||| |||||| ||||||||||||| | || || || |||||||| |||       ||||| |||||| | |  ||||||| |||||    
T  2635058 tatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttga-------catgtttgattgcttttaagtagaactgatt 2635150  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||| |||||||| | ||||||| |||   ||| | ||||||| |||||| ||||||||    
T  2635151 ttgcctccagaattgattatgcttgaagctagagattggagcttttgagtctagaattgatttt 2635214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 33456269 - 33456326
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||||| |||||||||| || | ||||||||||| | || |||||||||||    
T  33456269 tatgtttggttccacttctagagggactataattgattttgaatgtgtagaattgatt 33456326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 33843586 - 33843647
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    ||||||||||| | ||||||||||  |||||||||||| | ||||| ||||||| |||||||    
T  33843586 tatgtttggtttcacttctagagggtccaaaattgattctagaggtgtagaattaattctga 33843647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 16551853 - 16551913
Alignment:
Q  146 atgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    |||||||||||| |||  ||||  | ||||||||||||| ||||| |||||||||||||||    
T  16551853 atgtttggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctga 16551913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 37353400 - 37353464
Alignment:
Q  211 taacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtta 275  Q
    |||||||| || ||||| || ||||||||||| |||| ||| |||||||||||| ||| ||||||    
T  37353400 taacatgtttgcttgttttcgagtagaattgactttgtctctaaaattgattctgcttaaagtta 37353464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 275
Target Start/End: Original strand, 37365374 - 37365438
Alignment:
Q  211 taacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtta 275  Q
    |||||||| || ||||| || ||||||||||| |||| ||| |||||||||||| ||| ||||||    
T  37365374 taacatgtttgcttgttttcgagtagaattgactttgtctctaaaattgattctgcttaaagtta 37365438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 43571475 - 43571531
Alignment:
Q  254 aaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttttg 310  Q
    ||||||||| ||||||||| ||  |||| || ||||| |||||||||||||||||||    
T  43571475 aaattgattatacttgaagctataatttttaacttttaattctagagttgatttttg 43571531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 52061404 - 52061456
Alignment:
Q  220 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 272  Q
    ||||||||||  |||||||||||||||| | | | ||||||||||||||||||    
T  52061404 tgattgttgttgagtagaattgattttggccctagaattgattctacttgaag 52061456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 53913706 - 53913638
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggattt 281  Q
    |||||| || |||||||| |||||||||||||||||||  | |||||||| ||||| ||| || |||||    
T  53913706 acatgtttgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgattt 53913638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 54705501 - 54705437
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattc 295  Q
    |||| ||||||||||||||| | ||||||| || |||||||| |||| |||||| ||||||||||    
T  54705501 agtataattgattttgcctcaataattgatactaacttgaagctagggtttgtagcttttgattc 54705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 44141391 - 44141084
Alignment:
Q  1 ctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttactttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44141391 ctttgtaatactaatttttaagttcaaagctttatttcctgtagcgattgcttgtactttgcttcagctgcttggttgttgttactgatgatttacttat 44141292  T
Q  101 aggacaatttttcccgtttgcttgtattcttgttcgactttgtatatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattga 200  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  44141291 aggacaattttacccgttagcttgtattcttgtacgactttgtatatgtttggttccacttctagaggaaccaaaattgattctggaggtctagaattga 44141192  T
Q  201 ttctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  44141191 ttctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagag 44141092  T
Q  301 ttgatttt 308  Q
    ||||||||    
T  44141091 ttgatttt 44141084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 37684371 - 37684456
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||  |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||||| | ||||||||    
T  37684371 ttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgatttt 37684456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 32927864 - 32927944
Alignment:
Q  229 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| ||||||||| |||| || ||||||    
T  32927864 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcattttt 32927944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 308
Target Start/End: Complemental strand, 13384819 - 13384688
Alignment:
Q  170 accaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttg 269  Q
    |||| |||||||||||||||| |||||||||||||||       ||||| || |||||||| ||| |||||  || |  ||||||||||||||||| |||    
T  13384819 accataattgattttggaggtgtagaattgattctga-------catgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttg 13384727  T
Q  270 aagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||| ||  ||||||| |||||||||||||| ||||||||    
T  13384726 aagctaaaatttgtagcttttgattctagaattgatttt 13384688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 4663011 - 4662936
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||| |||  |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgattttt 4662936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 41318887 - 41318825
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 296  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||| ||||||||||    
T  41318887 tagaatttattttgcctttaaaattgattctacttgaagttagaatttgtacattttgattct 41318825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 308
Target Start/End: Complemental strand, 38537457 - 38537392
Alignment:
Q  243 ttttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||||||||||| |||||||||||| ||| |  |||||||| |||||||||||||||||||    
T  38537457 ttttgcctccaaaattgtttctacttgaagctagaaactgtaccttctgattctagagttgatttt 38537392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 38868464 - 38868549
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||| |||| |||||||  |||||| |||||||||||||||||||| || |||||||| |||||| ||||| | ||||||||    
T  38868464 ttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgatttt 38868549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 26668503 - 26668563
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctactt 268  Q
    ||||||||||| ||||| ||||| ||||||||||||| |||||||| ||||||||||||||    
T  26668503 ttctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctactt 26668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 10367973 - 10368047
Alignment:
Q  235 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||| ||||||| ||||| |||||||||| | ||||||||| | |||||||||||||| || ||||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaattcattttt 10368047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 36200242 - 36200166
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||| || || ||||| ||||||||| ||||||||||| |||||||   ||||||||||||| ||||||||    
T  36200242 agtagaattgtttatgtctccagaattgattcaacttgaagttatgatttgtcgattttgattctagaattgatttt 36200166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 15677903 - 15677849
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| |||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttt 15677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 35494990 - 35495042
Alignment:
Q  257 ttgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| ||| |||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgtttttt 35495042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 35525363 - 35525427
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaag 272  Q
    |||| |||||| ||||||||||| ||||||||||||| | || ||| |||||||| |||||||||    
T  35525363 ttctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 10367896 - 10367955
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattct 204  Q
    ||||||||||||  ||||||||||  |||||||||||| ||||| | |||||||||||||    
T  10367896 tatgtttggttctacttctagaggggccaaaattgattatggagatatagaattgattct 10367955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 26100233 - 26100179
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||| ||||| |||||| ||||||||||| |||||||||||| | |||||||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgattttt 26100179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 32994329 - 32994275
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||||| || ||||| || ||||||| |||||| |||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgattttt 32994275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  240 tgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 292  Q
    |||||||||||| |||||||||||| |||||||| |||||| |||| |||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 16972174 - 16972097
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||| || | |||||| || |||||| ||| |||||||  |||| ||| |||| |||||||||    
T  16972174 agtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaattttagaattgattttt 16972097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 4950459 - 4950499
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaag 272  Q
    |||||||||||||||||||| ||||||||||  ||||||||    
T  4950459 agtagaattgattttgcctcaaaaattgattagacttgaag 4950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 31721 - 31877
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    ||||||||||||| |||||||||  ||||||||||||| | ||||| |||||||||||||||       ||||| || |||||||| |||| ||||||||    
T  31721 tatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctga-------catgtttggttgttgtcgagtaaaattgatt 31813  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
     ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || ||||||||    
T  31814 ctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgatttt 31877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 309
Target Start/End: Complemental strand, 5724826 - 5724663
Alignment:
Q  139 tttgtatatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaa 238  Q
    ||||| ||||||||||||| ||||||||||  |||||||| ||| | || || |||||||||||||||       ||||| ||  || | ||  ||||||    
T  5724826 tttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctga-------catgtttggatgctttcaggtagaa 5724734  T
Q  239 ttgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||||    
T  5724733 ttgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgattttt 5724663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 3481964 - 3482097
Alignment:
Q  175 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 274  Q
    |||||||| || | || |||||||||||||||||| | |||||| |||||||||||  |||||||||||| || ||  | |||||||| |||||||||||    
T  3481964 aattgattatgtatgtgtagaattgattctgagttatgacatgtttgattgttgtcaggtagaattgattctgtctttagaattgattatacttgaagtt 3482063  T
Q  275 aggatttgtaccttttgattctagagttgatttt 308  Q
    | |||||||| | ||||||| |||| ||||||||    
T  3482064 aagatttgtagcctttgattttagaattgatttt 3482097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 308
Target Start/End: Original strand, 4910803 - 4910959
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    ||||||||||||| ||| |||||  || | |||||||| || | || |||||||||||||||       ||||| || |||| ||| | |||||||||||    
T  4910803 tatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctga-------catgtttggttgtcgtcaattagaattgatt 4910895  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
     |||||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||||||    
T  4910896 ctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 4910959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 6654200 - 6654124
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||||||||| ||| || |||| ||||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  6654200 agtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgatttt 6654124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 16540082 - 16540144
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgatt 294  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||||||||| |||||||||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgatt 16540144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 308
Target Start/End: Complemental strand, 25195550 - 25195400
Alignment:
Q  149 tttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 248  Q
    ||||||||| |||||||||||||||||||||||| |||| || || |||||||||||       |||||| || ||| | || |||| |||||||| |||    
T  25195550 tttggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctg-------acatgtttggttgctatcgagtataattgattctgc 25195458  T
Q  249 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||  ||||||||||||||||||   |||||||||  |||| |||||| | ||||||||    
T  25195457 ctccggaattgattctacttgaag--cggatttgtagtttttcattctataattgatttt 25195400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 7952809 - 7952752
Alignment:
Q  242 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    ||||||||||||||||| |||||||||||||  |||||||||| ||||||||||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctaga 7952752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 765496 - 765422
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 306  Q
    ||||||| || ||||| ||| | |||||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  765496 agtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 6896037 - 6895984
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||| ||||||||||||||||| |||||||||||||| || |||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatttatttt 6895984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 2234490 - 2234566
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||  |  || | |||||||||||||| ||||||||    
T  2234490 agtagaattgattttgccttcaaaattgattcaacttgaagctaaaaactgaagcttttgattctagaattgatttt 2234566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 26280581 - 26280657
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||| | ||||||||| |||||||| ||| |||||||  ||||||||| | | |||||||||    
T  26280581 gtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgattttt 26280657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 10400805 - 10400728
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||| ||||||| | | |||| |||||| ||||||||||||||| || | |||||||||| | |||||||||    
T  10400805 agtagaattgtttttgccactagaattaattctagttgaagttaggatttctagcctttgattctaaaattgattttt 10400728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 852512 - 852584
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||| |||||||||||| ||||||||| |||||||| ||| | |||||  || |||||||||| |||||||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaattgattttt 852584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 1485256 - 1485180
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||| |||||||||  | |||||||||||||||||  ||| | ||| | |||||||||||||| ||||||||    
T  1485256 agtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattctagaattgatttt 1485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 2008498 - 2008403
Alignment:
Q  175 aattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagtt 274  Q
    |||||||||||||||| |||||||| ||||||       ||||| |||||||| || ||||||||| |||||| ||||| |||  ||||||||||||| |    
T  2008498 aattgattttggaggtgtagaattgtttctga-------catgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagct 2008406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 31710572 - 31710512
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctg 205  Q
    ||||||||||||||||| |||||  |||| |||||||| |||| || ||||||||||||||    
T  31710572 tatgtttggttcctcttttagagagaccataattgattgtggatgtgtagaattgattctg 31710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 24974192 - 24974223
Alignment:
Q  234 tagaattgattttgcctccaaaattgattcta 265  Q
    ||||||||||||||||||||||||||||||||    
T  24974192 tagaattgattttgcctccaaaattgattcta 24974223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 35098282 - 35098244
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaag 272  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  35098282 tagaattgattttgcctacaaaattgattctaattgaag 35098244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 10565031 - 10564974
Alignment:
Q  236 gaattgattttgcctccaaaattgattcta-cttgaagttaggatttgtaccttttga 292  Q
    ||||| |||||||||| ||| | ||||||| ||||||||||||||||||| |||||||    
T  10565031 gaatttattttgcctctaaattcgattctaacttgaagttaggatttgtagcttttga 10564974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 2234324 - 2234272
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgt 283  Q
    |||||||||||||||||||||  |||||||||| || |||||||| |||||||    
T  2234324 agtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgt 2234272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 284
Target Start/End: Original strand, 14993077 - 14993105
Alignment:
Q  256 attgattctacttgaagttaggatttgta 284  Q
    |||||||||||||||||||||||||||||    
T  14993077 attgattctacttgaagttaggatttgta 14993105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 30503104 - 30503261
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    |||| |||||||| |||||| |||   |||||||||||||||| || |||||||||||||       |||||||  ||||| | || || |||| |||||    
T  30503104 tatgcttggttccacttctaaaggggtcaaaattgattttggaagtgtagaattgattct-------aacatgttcgattgatttcaagaagaaatgatt 30503196  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||||||||||  |||||| ||| |||||||||| ||| |||||||||    
T  30503197 ttgcctccaaaattgattctacttgaagccaggattcgtagcttttgattcaagaattgattttt 30503261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 33047742 - 33047683
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattct 204  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattct 33047683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 2002805 - 2002728
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||||||||| |  ||||||||||||||| |||||||||||  |||| |||||| | |||||||||    
T  2002805 agtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgattttt 2002728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 42740968 - 42741029
Alignment:
Q  248 cctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  42740968 cctccataattgattctacttgaagctaagatttgtagcttttgattctagaattgattttt 42741029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 10644578 - 10644630
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 284  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  10644578 agtagaattgattctgcctccaaaatttattctacttgaagttaagatttgta 10644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 22535968 - 22536051
Alignment:
Q  227 tgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttttg 310  Q
    |||| |||||||||||||||||||  | ||||||||||||||||| |||| ||||| | ||||||||| |||| || |||||||    
T  22535968 tgtcaagtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaattaatttttg 22536051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 31453358 - 31453422
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 296  Q
    ||||||||| |||||||||| | |||||||||||||||||| ||  |||||| ||||||||||||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgattct 31453422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 16518758 - 16518816
Alignment:
Q  236 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgatt 294  Q
    |||||| |||||| |||| ||||||||||||| |||| ||||||||||| |||||||||    
T  16518758 gaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgatt 16518816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 42982523 - 42982596
Alignment:
Q  238 attgattttgcctccaaaatt--gattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||| ||||  |||||||||||||| ||| | ||||| |||||||||| ||| |||||||||    
T  42982523 attgattttgcctccagaattttgattctacttgaagctagaaattgtagcttttgattccagaattgattttt 42982596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 11504193 - 11504104
Alignment:
Q  210 ctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    ||||||||| |||| |||||  |||| || ||||| | |||||||||||||||||||   |||||||||||||||  |||||||| ||||    
T  11504193 ctaacatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtagtttttgattataga 11504104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 1976975 - 1976940
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctact 267  Q
    |||||||||||||||| |||||||||||||||||||    
T  1976975 agtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 43501123 - 43501174
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 306  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||| ||||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgatt 43501174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 680385 - 680347
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaag 272  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  680385 tagaactgattttgcctccagaattgattctacttgaag 680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 21659693 - 21659771
Alignment:
Q  231 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||| ||||||||||||||||| ||||| ||||||| | || ||  | ||||| ||| |||||||||| |||||||||    
T  21659693 cagtaaaattgattttgcctccataattgtttctactcgtagctaaaaattgtagcttatgattctagaattgattttt 21659771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 32777946 - 32777988
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagtta 275  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32777946 gtagaattgattttgcctccataatttattcaacttgaagtta 32777988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 33502223 - 33502257
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctact 267  Q
    ||||||||||||||||||||| |||||||||||||    
T  33502223 gtagaattgattttgcctccagaattgattctact 33502257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 3352042 - 3352127
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | ||||||||    
T  3352042 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatttt 3352127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 292  Q
    |||||| ||||||||||||| | |||||||||| |||||||  || ||||||||||||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 12037012 - 12037112
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 307  Q
    ||||||||||| || ||||||||  ||||||||| || ||  || | ||||||||||| |||||  ||  ||||||| |||||||||||| | |||||||    
T  12037012 ttctaacatgtttggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T
Q  308 t 308  Q
    |    
T  12037112 t 12037112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 9818717 - 9818786
Alignment:
Q  240 tgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||| |||||||||||||||||| || |||||||| |||||||||||||| |||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttt 9818786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 308
Target Start/End: Original strand, 11647981 - 11648133
Alignment:
Q  149 tttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgc 248  Q
    ||||| ||| |||||||||| |||| |||||||||||| ||| || |||||||| |||       ||||| |||||| |||| ||||||||| ||| |||    
T  11647981 tttggctccacttctagagggaccataattgattttggtggtgtataattgattttga-------catgtttgattgctgtcgagtagaatttattatgc 11648073  T
Q  249 ctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
     |  |||||||||||||||||||| || ||||||||| |||||||| || | ||||||||    
T  11648074 atttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgatttt 11648133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 307
Target Start/End: Complemental strand, 6951392 - 6951340
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 307  Q
    |||||||||||||||||||||||||||||| |||||||||||| | |||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgattt 6951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 27374425 - 27374349
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgta 284  Q
    |||| |||||| || ||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  27374425 ttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 14299310 - 14299381
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||| |  ||||||||||||||||||||||||||||||||  |||| |||||||| ||| ||||    
T  14299310 aattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggtttt 14299381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 38845436 - 38845494
Alignment:
Q  250 tccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||    
T  38845436 tccaaaattgattctacttgaagctaagatttgtagtttttgattctagaattgatttt 38845494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 36639912 - 36639989
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||||||||||||||| |||||||||||||| | | | ||||| ||| | |||||||| ||| |||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaattgtttttt 36639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 38845701 - 38845644
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||||| |||||||||  ||||||||||||| ||||||| |||||||||||    
T  38845701 tatgtttggttccacttctagagagaccaaaattgattctggaggtgtagaattgatt 38845644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 13171866 - 13171806
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 297  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||||  |||||||||||    
T  13171866 aattgattctgcctccaaaattgattctacttgaagaaaagatttgtaaattttgattcta 13171806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 43268467 - 43268519
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtac 285  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||    
T  43268467 gtagaattgattttgcctccagaattggttctacttgaagttgagatttgtac 43268519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 42858085 - 42858159
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||| |||||| ||| | |||||||| ||||||||||||||||||| | ||||| |||||| | ||||||||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgatttt 42858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 18851169 - 18851116
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||||||||| || |||||||| ||||||||| |||| ||||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgatttt 18851116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 18851272 - 18851211
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    |||||||| |||| |||||||||| ||||||||||||| ||||| | ||||||||| |||||    
T  18851272 tatgtttgattccgcttctagagggaccaaaattgattatggagttgtagaattgactctga 18851211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 34250461 - 34250396
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 297  Q
    ||||||||||||| |||||| | |||||||||||||||| | ||| | ||||| ||||||||||||    
T  34250461 agtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattcta 34250396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 22226426 - 22226279
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    |||||||| |||| ||| |||| |||| | ||||||||||||| || ||||||||||||||       |||||| || |||||||| | || ||||||||    
T  22226426 tatgtttgattccacttttagacgaactataattgattttggacgtgtagaattgattctg-------acatgtttggttgttgtcgactaaaattgatt 22226334  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    |||  |     ||||||||||||||||| ||| ||||||| ||||||||| ||||    
T  22226333 ttgttttgttgattgattctacttgaagatagtatttgtagcttttgattttaga 22226279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 1105414 - 1105492
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga-ttctagagttgatttt 308  Q
    ||||||||||||||||| | ||||||||||| | ||| ||||||| |||||||| ||||||| ||||| | ||||||||    
T  1105414 agtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtagcttttgacttctataattgatttt 1105492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 3970506 - 3970433
Alignment:
Q  237 aattgattttgcctccaaaattgattctact-tgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||| ||||| ||||||| || | | |||||||||    
T  3970506 aattgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttgactccaaacttgattttt 3970433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 5468729 - 5468786
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttga 270  Q
    |||||| ||||||||||| | || |||||||| |||||||| | ||||||||||||||    
T  5468729 acatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 8121547 - 8121596
Alignment:
Q  260 attctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||| ||||||| | ||||| ||| ||||||||||||||||||||    
T  8121547 attctacttaaagttagaaattgtagcttctgattctagagttgattttt 8121596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 22572540 - 22572511
Alignment:
Q  240 tgattttgcctccaaaattgattctacttg 269  Q
    ||||||||||||||||||||||||||||||    
T  22572540 tgattttgcctccaaaattgattctacttg 22572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgatt 262  Q
    |||||| |||||||| || |||||||||||||||||||| | ||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 32980519 - 32980583
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 297  Q
    ||||||| ||||||||| | || |||||||| |||||||||||| ||||| || ||||||||||||    
T  32980519 agtagaagtgattttgc-tgcagaattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 36290001 - 36290086
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||| ||||||||| || |||| | || |||||||| |||||||||||| |||||||   ||||||||| | | ||||||||    
T  36290001 ttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccatatttgatttt 36290086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 3738197 - 3738141
Alignment:
Q  253 aaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||| |||||||||| | |||||  ||||||||||| | |||||||||    
T  3738197 aaaattgattctagttgaagttagaagttgtagtttttgattctataattgattttt 3738141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 42439726 - 42439662
Alignment:
Q  234 tagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttgattcta 297  Q
    ||||||||||||| |||||| |||||||||| |||||||| ||| || |||| ||||||| ||||    
T  42439726 tagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtcta 42439662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 28084078 - 28083933
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgatt 244  Q
    |||||||| |||| ||||||||||| |||||||||| | |||  || |||||||||||||||       ||| | || ||||| || |||||||||||||    
T  28084078 tatgtttgattccacttctagaggagccaaaattgactctggtagtgtagaattgattctga-------catatttggttgttttcgagtagaattgatt 28083986  T
Q  245 ttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 297  Q
    ||| || |  |||||||||||||||||| ||| ||||||| ||||||||||||    
T  28083985 ttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattcta 28083933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 31362310 - 31362238
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||| ||||||||||    |||||||| ||||||| |||||||||||||| |||||||||    
T  31362310 gtagaattgattttgcctccataattgattct----gaagttagaatttgtagcttttgattctagaattgattttt 31362238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 6021779 - 6021844
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattcta 297  Q
    |||||||||||||||||||| | ||| |||||||||||||| |||||| |||| ||||||||||||    
T  6021779 agtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattcta 6021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 48549110 - 48549045
Alignment:
Q  244 tttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||| |||||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaattgattttt 48549045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 3016140 - 3016210
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgat 305  Q
    ||||||||||||||| |  | ||||||||||||||||| |||| ||||||| |||||||||||||| |||||    
T  3016140 tagaattgattttgcttt-ataattgattctacttgaacttagaatttgtagcttttgattctagaattgat 3016210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 1514317 - 1514395
Alignment:
Q  231 cagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||| || ||||| || |||||||||| ||||||||||||| ||||||||||| ||||| ||| || | |||||||||    
T  1514317 cagtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattatataattgattttt 1514395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 11049252 - 11049302
Alignment:
Q  259 gattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||| ||||||||||| |||||||||||| | |||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgattttt 11049302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 308
Target Start/End: Complemental strand, 36780311 - 36780150
Alignment:
Q  141 tgtatatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaatt 240  Q
    |||||||||||| ||   ||| |||||| |||| |||||||| ||||||| ||||||||||| |||        |||| || |||||||| ||| | |||    
T  36780311 tgtatatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgat-------atgtttggttgttgtcgagttgtatt 36780219  T
Q  241 gattttgcctccaaaattgattctacttgaagttagga-tttgtaccttttgattctagagttgatttt 308  Q
     |||||  || ||||||  ||||||||||||||||||| |||||| ||||||||| |||| ||||||||    
T  36780218 aattttatcttcaaaatgaattctacttgaagttaggattttgtagcttttgattatagaattgatttt 36780150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 50571264 - 50571326
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    ||||||||||  || || ||||||||||||||||||||||||||||||  |||| ||||||||    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtagttttttattctaga 50571326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 7524120 - 7524165
Alignment:
Q  264 tacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgattttt 7524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 51500939 - 51500867
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||| |||||||      |||||||||||  ||||||||||| |||||||||||||| |||||||||    
T  51500939 agtagaattgattttacctccaag-----ttctacttgaacctaggatttgtagcttttgattctagaattgattttt 51500867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 10325043 - 10324971
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||| |||||||||| | |||||| ||||||||||| ||| | ||||| |||||||||||| | |||||||||    
T  10325043 aattaattttgcctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgattttt 10324971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 309
Target Start/End: Original strand, 3416038 - 3416132
Alignment:
Q  215 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||| ||||||| ||  |||||||||||||  || || |||||||||| ||||| |||||| ||||||||  |||| ||| |||| |||||||||    
T  3416038 atgtttgattgtcgttgagtagaattgattacgcatctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgattttt 3416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 7790729 - 7790675
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||||||||| ||||||||  ||| ||||||| | |||||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgattttt 7790675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 30557505 - 30557555
Alignment:
Q  258 tgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||| |||||| |||||||||||  ||||||||||||| ||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgatttt 30557555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 5268194 - 5268247
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtac 285  Q
    |||||||| ||||||||||||||||||||||| ||| |||| ||| ||||||||    
T  5268194 gtagaattaattttgcctccaaaattgattctaactcgaagctagaatttgtac 5268247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 28287423 - 28287370
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||| ||||||||||||  |||||||||| ||||||||| |||| ||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgatttt 28287370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 34387812 - 34387727
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||  ||||||| |||| ||| || || |||||||| ||||||||||| ||| ||| | |||||||||||| | ||||||||    
T  34387812 ttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagttgggaattgcagcttttgattctataattgatttt 34387727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 47322025 - 47321941
Alignment:
Q  223 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||| ||||||||||||| ||| || | |||||||| ||||||||| ||| ||||| |  |||| |||||||| ||||||||    
T  47322025 ttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgca-gttttaattctagaattgatttt 47321941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 47053385 - 47053438
Alignment:
Q  232 agtagaattgattttgcctccaaa----attgattctacttgaagttaggattt 281  Q
    |||||||||||||||||||||| |    |||||||||| |||||||||||||||    
T  47053385 agtagaattgattttgcctccagaattgattgattctatttgaagttaggattt 47053438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 15903635 - 15903580
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttga 292  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttga 15903580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 27571818 - 27571913
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||| |||||| | || |||| |||||||||| |||| | |||||||||||||||||||||| | ||| | |||||||||||||| ||||||||    
T  27571818 acatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattctagaattgatttt 27571913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 41386949 - 41386852
Alignment:
Q  208 ttctaacatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgat 305  Q
    |||| |||||| |||||| | || |||| |||||||||  ||| || |||||||||||||||||| ||||||||||| ||||| |||||||| |||||    
T  41386949 ttctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 40491558 - 40491630
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||| || |||||| |||||||||||||| | |||||| |||||||||||||| |||| ||||    
T  40491558 aattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattctagaattgactttt 40491630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 22195820 - 22195915
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||| ||||| ||||| ||||||||||||| || |  ||||||||||| ||||| ||| || |||||||| |||||||||||| | ||||||||    
T  22195820 acatgtttgattattgtcgagtagaattgattatgtcctcaaaattgattttactttaagctatgatttgtaacttttgattctaaaattgatttt 22195915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 36270955 - 36271012
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttt 289  Q
    |||||||||||||||||||| | |||| ||||||||||||||| ||||||||| ||||    
T  36270955 agtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtaccttttga 292  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 44856917 - 44856843
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||||||||| |||||||||||||| |||||||||  || ||||| || | |||||||||||| ||||||||    
T  44856917 agtagaattgattttccctccaaaattgatactacttgaa--tatgatttataacatttgattctagaattgatttt 44856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 5489956 - 5489880
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||| | ||| | ||||||||| || | ||||||||    
T  5489956 agtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattatataattgatttt 5489880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 28725160 - 28725088
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatt 306  Q
    |||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||| | ||||||    
T  28725160 tagaattgattcagcctccaatattgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 30182404 - 30182329
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||||  ||||||||||||||||||||||||| ||  | ||||| |||||||||||||| || ||||||    
T  30182404 gtagaattgatttc-cctccaaaattgattctacttgaagctaaaaattgtagcttttgattctagaattaattttt 30182329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 45004997 - 45005035
Alignment:
Q  234 tagaattgattttgcctccaaaattgattctacttgaag 272  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  45004997 tagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattct 296  Q
    |||||||||||||||||| || |||||||| |||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 46325570 - 46325627
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||| | ||||||||| ||||||| || |||||||| || |||||||||||    
T  46325570 tatgtttggtttcacttctagagaaaccaaatttaattttggatgtgtagaattgatt 46325627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 54596774 - 54596869
Alignment:
Q  213 acatgtctgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||| || ||||| || ||||||||||||| ||||||||||| ||||| || |||||||||| ||||||| ||||| ||| |||| ||||||||    
T  54596774 acatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaattgatttt 54596869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 7717431 - 7717367
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattct 296  Q
    |||||||||||||||||||||| |||||||||||||||||| ||| | ||||| ||| |||||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgattct 7717367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 25359679 - 25359608
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||| |||||||| |||||||||||||||||||||| |||||||  |||| |||||| | ||||||||    
T  25359679 aattgattctgcctccagaattgattctacttgaagttagaatttgtagttttttattctataattgatttt 25359608  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 40736659 - 40736580
Alignment:
Q  220 tgattgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    ||||||||||| |||| |||||||||||| ||| ||||||||||||||||||  ||  ||||||  ||||||||||||||    
T  40736659 tgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttgtcgcttttgattctaga 40736580  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 52141437 - 52141374
Alignment:
Q  143 tatatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    ||||||||||||||| |||||||||| |||| |||||||||| ||||| |||||| ||||||||    
T  52141437 tatatgtttggttccacttctagagggaccataattgatttttgaggtgtagaatagattctga 52141374  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 32523451 - 32523373
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttg-aagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||| ||| ||||||||||||| ||||  ||||||||| ||||||||||||||| |||||||||||| | |||||||||    
T  32523451 agtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattctaaaattgattttt 32523373  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 1290676 - 1290733
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||||| ||||||||||||| |||||||||| | ||||| |||||||||||    
T  1290676 tatgtttggttccacttctagaggaactaaaattgattctagaggtgtagaattgatt 1290733  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 35058336 - 35058412
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||||||||||| | ||||||||||||||| || ||| | ||  | |||||||||||||| ||||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgatttt 35058412  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 37335139 - 37335067
Alignment:
Q  237 aattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||||||||| | |||||||| |||| |||||||| | | ||| |||||||||||||| |||||||||    
T  37335139 aattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgattttt 37335067  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 1441491 - 1441424
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctaga 299  Q
    |||||||||||||||| ||| | ||| || ||||||||||  ||||||||||| ||||||||||||||    
T  1441491 agtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 44771670 - 44771746
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    ||||||||| ||||||||||  |||||||||||| | ||  ||| ||||||| |||||||||||| | |||||||||    
T  44771670 gtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgattttt 44771746  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 48410939 - 48410891
Alignment:
Q  215 atgtctgattgttgtccagtagaattgattttgcctccaaaattgattc 263  Q
    |||| |||||| | || ||||||||||||||||||||||||||||||||    
T  48410939 atgtttgattgctttcgagtagaattgattttgcctccaaaattgattc 48410891  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 272
Target Start/End: Complemental strand, 30301108 - 30301069
Alignment:
Q  233 gtagaattgattttgcctccaaaattgattctacttgaag 272  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  30301108 gtagaattgattttgcctccaaaattgactctatttgaag 30301069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 41115472 - 41115413
Alignment:
Q  232 agtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttg 291  Q
    ||||||||||||||||| |  | |||||||||||||||||| ||| ||||||| ||||||    
T  41115472 agtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 3845302 - 3845245
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||||| ||| | ||| |||||||||||||| | ||||| |||||||||||    
T  3845302 tatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgatt 3845245  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 35058065 - 35058118
Alignment:
Q  255 aattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||| ||||| ||||||||||| ||||| ||| |||| ||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgatttt 35058118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 35264518 - 35264445
Alignment:
Q  235 agaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||| ||||||||||  ||||||||||||||  ||| | ||  | |||||||||||||| ||||||||    
T  35264518 agaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattctagaattgatttt 35264445  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 38022410 - 38022451
Alignment:
Q  232 agtagaattgatttt-gcctccaaaattgattctacttgaag 272  Q
    ||||||||||||||| |||||||||||||||||||| |||||    
T  38022410 agtagaattgatttttgcctccaaaattgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 40147950 - 40147885
Alignment:
Q  242 attttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattt 307  Q
    |||||| || || |||||||||||||| ||| ||| ||||| | |||||||||||||| |||||||    
T  40147950 attttgtcttcagaattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 52363960 - 52364017
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    ||||||||||||| ||| |||||| ||||||||||||| | ||||| || ||||||||    
T  52363960 tatgtttggttccacttttagagggaccaaaattgattatagaggtgtataattgatt 52364017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 308
Target Start/End: Complemental strand, 44958712 - 44958640
Alignment:
Q  236 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgatttt 308  Q
    |||||||||||||||||| | ||||||||||| || | ||| | ||| | ||||||||||||||  |||||||    
T  44958712 gaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattctagaaatgatttt 44958640  T

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Target: scaffold0314 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 17322 - 17378
Alignment:
Q  146 atgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgatt 202  Q
    |||||||||||| ||||||||| |||||||||||||| ||||||| |||||||||||    
T  17322 atgtttggttccacttctagagtaaccaaaattgattctggaggtgtagaattgatt 17378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 31605 - 31544
Alignment:
Q  145 tatgtttggttcctcttctagaggaaccaaaattgattttggaggtctagaattgattctga 206  Q
    ||||||| ||||| |||||||||| ||||||||||||||| ||  | || ||||||||||||    
T  31605 tatgtttagttccacttctagagggaccaaaattgattttagacctgtaaaattgattctga 31544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 23699 - 23626
Alignment:
Q  236 gaattgattttgcctccaaaattgattctacttgaagttaggatttgtaccttttgattctagagttgattttt 309  Q
    |||||||||||| ||||| || | ||||||  ||||| ||||||||||| ||||||| ||||||  ||||||||    
T  23699 gaattgattttgtctccataaataattctaactgaagctaggatttgtagcttttgaatctagacgtgattttt 23626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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