View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4594_low_9 (Length: 298)
Name: NF4594_low_9
Description: NF4594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4594_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 375255 - 375087
Alignment:
| Q |
18 |
cacagaaaaacaagaagaatgttttactctcaaacgtttttggcgcgaaaaggaccactctcaacggtttggatcgctgctcatcttcaacacagactca |
117 |
Q |
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| T |
375255 |
cacagaaaaacaagaagaatgttttactctcaaacgtttttggcgcgaaaaggaccactctcaacggtttggatcgctgctcatcttcaacacagactca |
375156 |
T |
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| Q |
118 |
agaaatctcagtatgcttctactgatattccctccactgttcgtaagtaccatttacttcaaaacccaa |
186 |
Q |
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| T |
375155 |
agaaatctcagtatgcttctactgatattccctccactgttcgtaagtaccatttacttcaaaacccaa |
375087 |
T |
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Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 375067 - 374999
Alignment:
| Q |
216 |
catcttaaagttttaaagattgaatttttctcaaattcctatatgggttttatgatctttggagggttg |
284 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
375067 |
catcttaaagtttaaaagattaaatttttctcaaattcctatatgggttttgtgatctttggagggttg |
374999 |
T |
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