View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4595-Insertion-1 (Length: 844)

Name: NF4595-Insertion-1
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4595-Insertion-1
NF4595-Insertion-1
[»] chr3 (25 HSPs)
chr3 (8-637)||(3357535-3358159)
chr3 (10-569)||(3200354-3200911)
chr3 (23-184)||(3721350-3721511)
chr3 (8-312)||(3322389-3322693)
chr3 (10-312)||(3310792-3311094)
chr3 (705-840)||(3358227-3358380)
chr3 (242-307)||(3221871-3221936)
chr3 (242-307)||(3280653-3280718)
chr3 (240-312)||(2768725-2768797)
chr3 (240-311)||(2839010-2839081)
chr3 (8-135)||(3304117-3304244)
chr3 (236-414)||(3304339-3304517)
chr3 (240-310)||(2748656-2748726)
chr3 (240-296)||(2856220-2856276)
chr3 (333-410)||(3198811-3198888)
chr3 (330-398)||(2748577-2748645)
chr3 (330-398)||(2768648-2768716)
chr3 (240-296)||(2797033-2797089)
chr3 (330-398)||(2856301-2856369)
chr3 (176-283)||(3198666-3198767)
chr3 (334-397)||(3311116-3311179)
chr3 (334-397)||(3322715-3322778)
chr3 (240-307)||(21936788-21936855)
chr3 (236-307)||(22104358-22104429)
chr3 (251-296)||(2790030-2790075)
[»] chr1 (3 HSPs)
chr1 (242-307)||(49386835-49386900)
chr1 (242-307)||(41947618-41947683)
chr1 (330-399)||(41947703-41947772)
[»] scaffold0691 (1 HSPs)
scaffold0691 (330-398)||(6643-6711)


Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 637
Target Start/End: Original strand, 3357535 - 3358159
Alignment:
Q  8 accaattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3357535 accaattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataac 3357634  T
Q  108 ttgatgtctttcatctctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtgaagctatgaatcccgaatggtcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3357635 ttgatgtctttcatctctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtgaagctatgaatcccgaatggtcga 3357734  T
Q  208 ccctttgtgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3357735 ccctttgtgccacatacttgctatactcatactcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttc 3357834  T
Q  308 gttggnnnnnnnnnnnnnnnnntcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtat 407  Q
    |||||                 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3357835 gttgg---ctcctcctcctccttcatcagcagcccttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtat 3357931  T
Q  408 ctctcaatcaatgtcagtgaagttccttcttcttttacaaaattgcagagttcccccacaacaaatgacactatagcatctgtcatttcatttcaatgtt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3357932 ctctcaatcaatgtcagtgaagttccttcttcttttacaaaattgcagagttcccccacaacaaatgacactatagcatctgtcatttcatttcaatgtt 3358031  T
Q  508 ttcatcaatcaggttaactcttgcaagcaattttggcaatccaaacaagttcaagtaccttggtttggtgcttaagcttttctgtaccataaaattcgac 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||  || | ||||||    
T  3358032 ttcatcaatcaggttaactcttgcaagcaattttggcaatccaaacaagttcaagtaccttgtttttgtgcttaagcttttctgtac--tagacttcgac 3358129  T
Q  608 taatgaatagttgcgtttagtctacgagaa 637  Q
    |||||||||| || ||||||||||||||||    
T  3358130 taatgaatagctgtgtttagtctacgagaa 3358159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 569
Target Start/End: Complemental strand, 3200911 - 3200354
Alignment:
Q  10 caattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaac-attgtacttctttctttgattccagcaagtgataact 108  Q
    ||||||| |||||||||  |||||| || |||||| |||||||| |||||| ||   || || |||| |||||||||||||||| || ||||||||||||    
T  3200911 caattcttggagctttaacccctctataactttctaatccactttcagacttaactgcataccattg-acttctttctttgatttcaccaagtgataact 3200813  T
Q  109 tgatgtctttcatctctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtgaagctatgaatcccgaatggtcgac 208  Q
    |||||||||  ||||| |||||||||| || | | | ||||| ||| || ||   |  |||||||  ||||||||| ||||| ||||| ||||| | |      
T  3200812 tgatgtcttgtatctcagaagcaatctggtgccgcgaattcatggtcttgataatgttaggaatcatttggagtgaggctataaatccagaatgattgtt 3200713  T
Q  209 cctttgtgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcg 308  Q
      ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3200712 gttttctgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagatgcttctcttagctgcttcacccaagttttgattccttcg 3200613  T
Q  309 ttggnnnnnnnnnnnnnnnnntcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtatc 408  Q
    ||||                 ||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||| ||||||||||||||| | ||    
T  3200612 ttggctcctcctcctcct---tcatcagcagcctttgtgtctgcatccttgagtgaaacttgaatgctctcaagttcatatttgatgtctttgaattctc 3200516  T
Q  409 tctcaatcaatgtcagtgaagttccttcttcttttacaaaattgcagagttcccccacaacaaatgacactatagcatctgtcatttcatttcaatgttt 508  Q
    ||||||||  |||||||||| ||||||||||||||||||| ||  |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  3200515 tctcaatccctgtcagtgaatttccttcttcttttacaaatttagagagttcctccaaaacaaatgacactacagcatctgtcatttcatttcaatgttt 3200416  T
Q  509 tcatcaatcaggttaactcttgcaagcaa-ttttggcaatccaaacaagttcaagtaccttg 569  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  3200415 tcatcaattaggttaactcttgcaagtaatttttggcaatccaaacaagttcaagtaccttg 3200354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 3721511 - 3721350
Alignment:
Q  23 tttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataacttgatgtctttcatc 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||    
T  3721511 tttagtccctctgtagctttctgatccacttccagactgaaactcaaaccgtgtacttctttcttcgattccagcaagtgataacttgatgtctttaatc 3721412  T
Q  123 tctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtga 184  Q
    ||||||||||||| |||||||||| ||| |||||| || |||||||||||||||||||||||    
T  3721411 tctgaagcaatctggtactgtgtagtcatggttttgatagaggcaggaatcgcttggagtga 3721350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 3322389 - 3322693
Alignment:
Q  8 accaattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataac 107  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||| |||| ||||||| ||||||   |||| |||||||||||  | ||||||||  |    
T  3322389 accaattctaggagttgtagtccctcggtagctttctgatccactttcagaatgaaacttaaacatgtcacttttttctttgattttaccaagtgattcc 3322488  T
Q  108 ttgatgtctttcatctctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtgaagctatgaatcccgaatggtcga 207  Q
    ||||||||||| |||| ||||||||||| ||| | || ||    |||||| ||| |||||||||||| ||||||  |  |||||| |||||||| ||||     
T  3322489 ttgatgtctttaatctttgaagcaatctggtattctgcatagttggttttgatcaaggcaggaatcgtttggagaaactctatgattcccgaatcgtcgg 3322588  T
Q  208 ccctttgtgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    ||| ||||| |  ||||||||||||||||||||| ||||  ||||||||||||||||||||  ||||||||| |||||||||||| | |  || ||||||    
T  3322589 cccattgtggcgcatacttgctatactcatactcgtcaactacatcttctatgcgaaaagatacttctcttacctgcttcacccatgctcggactccttc 3322688  T
Q  308 gttgg 312  Q
    |||||    
T  3322689 gttgg 3322693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 3310792 - 3311094
Alignment:
Q  10 caattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataactt 109  Q
    ||||||||||||||||||| ||||| |||||| | ||| ||||| |||||||||||  ||   ||||  ||||||||||||||  | ||||||||  |||    
T  3310792 caattctaggagctttagttcctctatagcttccagattcactttcagactgaaacagaagtgttgtcattctttctttgattttaccaagtgattcctt 3310891  T
Q  110 gatgtctttcatctctgaagcaatcttgtactgtgtattcaaggttttcatcgaggcaggaatcgcttggagtgaagctatgaatcccgaatggtcgacc 209  Q
    ||||||||| |||| ||||||||||| ||| | ||||| |  |||||| ||| ||||||||| || ||||||  | ||||| | || ||||||||||| |    
T  3310892 gatgtctttaatctttgaagcaatctggtattctgtatacttggttttgatcaaggcaggaagcggttggagaaaggctataattctcgaatggtcgatc 3310991  T
Q  210 ctttgtgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcgt 309  Q
    | |||||||| ||| ||||||||||||||||| ||||  ||||||||||||| || |||  | |||| || |||||||||||| ||||||| | ||||||    
T  3310992 cattgtgccacatatttgctatactcatactcgtcaactacatcttctatgcaaagagatacatctcgtacctgcttcacccatgttttgactacttcgt 3311091  T
Q  310 tgg 312  Q
    |||    
T  3311092 tgg 3311094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 705 - 840
Target Start/End: Original strand, 3358227 - 3358380
Alignment:
Q  705 aatagagcctgcagaaaaagtgggtgtgtaaagtagttataacttaat----------tata-taaatacagcagtgtgac-------agtaaccaagag 786  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||          |||| ||||||||||||||||||       ||||||||||||    
T  3358227 aatagagcctgcagaacaagtgggtgtgtaaggtagttataacttaataacttaactatataataaatacagcagtgtgacttgtgagagtaaccaagag 3358326  T
Q  787 tcttggtctgtgatatattattttcttaatcttttaatatgtgccaacaatcaa 840  Q
    ||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||    
T  3358327 tcttggtctttgatatattattttcttaatcttattatatgtgccaagaatcaa 3358380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 3221871 - 3221936
Alignment:
Q  242 atcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||    
T  3221871 atcaatcacatcttctatgtgaaaagatgcttctcttagctgcttcacccaagttttaactccttc 3221936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 3280653 - 3280718
Alignment:
Q  242 atcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||    
T  3280653 atcaatcacatcttctatacgaaaagatgcttctcttagctgcttcacccaagttttaactccttc 3280718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 2768797 - 2768725
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcgttgg 312  Q
    |||||||| |||||||| |||||||| || |||||||| |||||||||||||||||| | ||||| |||||||    
T  2768797 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttgg 2768725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 2839010 - 2839081
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcgttg 311  Q
    |||||||| |||||||| |||||||| || |||||||| |||||||||||||||||| | ||||| ||||||    
T  2839010 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttg 2839081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 3304117 - 3304244
Alignment:
Q  8 accaattctaggagctttagtccctctgtagctttctgatccacttccagactgaaactcaaacattgtacttctttctttgattccagcaagtgataac 107  Q
    |||||||||||||||||| | ||||||||||||| ||||| || |  ||||||||||   |||  |||| |||||||||||||||  | |||||| | ||    
T  3304117 accaattctaggagctttggaccctctgtagcttcctgattcattatcagactgaaatggaaatcttgttcttctttctttgattttaccaagtgttgac 3304216  T
Q  108 ttgatgtctttcatctctgaagcaatct 135  Q
    ||||||||||  ||||  ||||||||||    
T  3304217 ttgatgtcttgaatctgagaagcaatct 3304244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 414
Target Start/End: Original strand, 3304339 - 3304517
Alignment:
Q  236 atactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcgttggnnnnnnnnnnnnnnnnntcatca 335  Q
    |||||| || || ||||||||||||||||||||  |||||||||  ||||||||||| ||||||| |||||| ||||                 ||||||    
T  3304339 atactcgtcgattacatcttctatgcgaaaagatacttctcttacttgcttcacccatgttttgactccttcattggttcctcctccttcatcatcatca 3304438  T
Q  336 gcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtatctctcaa 414  Q
     |||||||| |||| |||||||||||  || |||||||| ||||||| ||||||||||| || |||||||  |||||||    
T  3304439 tcagcctttctgtcagcatccttgaggaaggattggatgctctcaagatcatctttgatatcattgaagtcactctcaa 3304517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 310
Target Start/End: Complemental strand, 2748726 - 2748656
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttcgtt 310  Q
    |||||||| |||||||| |||||||| || |||||||| |||||||||||||||||| | ||||| |||||    
T  2748726 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgtt 2748656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 2856220 - 2856276
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagtt 296  Q
    |||||||| |||||||| |||||||| || |||||||| ||||||||||||||||||    
T  2856220 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 2856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 410
Target Start/End: Original strand, 3198811 - 3198888
Alignment:
Q  333 tcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctttgaagtatctc 410  Q
    |||||||||||| ||||||||||||||||  ||  ||||||| |||||||||||| ||| || ||||| |||| ||||    
T  3198811 tcagcagcctttttgtctgcatccttgagcaaggtttggatgctctcaagttcattttttatctcttttaagtctctc 3198888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 2748645 - 2748577
Alignment:
Q  330 tcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 398  Q
    ||||| |||||| || |||||||||| |||||  ||| ||| ||| |||||||||||||||||||||||    
T  2748645 tcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 2748577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 2768716 - 2768648
Alignment:
Q  330 tcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 398  Q
    ||||| |||||| || |||||||||| |||||  ||| ||| ||| |||||||||||||||||||||||    
T  2768716 tcatccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 2768648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 2797089 - 2797033
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagtt 296  Q
    |||||||| |||||||| |||||||| || |||||||| || |||||||||||||||    
T  2797089 tcatcaatgacatcttcaatgcgaaatgatgcttctctcagatgcttcacccaagtt 2797033  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 2856301 - 2856369
Alignment:
Q  330 tcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 398  Q
    ||||| |||||| || |||||||||| |||||  ||| ||| ||| |||||||||||||||||||||||    
T  2856301 tcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtct 2856369  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 3198666 - 3198767
Alignment:
Q  176 ttggagtgaagctatgaatcccgaatggtcgaccctttgtgccatatacttgctatactcatactcatcaatcacatcttctatgcgaaaagaagcttct 275  Q
    ||||||| ||||||||| ||| ||||||| |||||||||||||| || | || |||| | ||      |||||||||||||||||||||||||  |||||    
T  3198666 ttggagtaaagctatgagtccagaatggttgaccctttgtgccacattcatgttatagtaat------caatcacatcttctatgcgaaaagattcttct 3198759  T
Q  276 cttagctg 283  Q
    || |||||    
T  3198760 ctcagctg 3198767  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 3311116 - 3311179
Alignment:
Q  334 cagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtc 397  Q
    |||| ||||||||||| |||||||||||  ||  ||||||| ||||||| ||||||||||||||    
T  3311116 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3311179  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 3322715 - 3322778
Alignment:
Q  334 cagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtc 397  Q
    |||| ||||||||||| |||||||||||  ||  ||||||| ||||||| ||||||||||||||    
T  3322715 cagcggcctttgtgtcagcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3322778  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 21936855 - 21936788
Alignment:
Q  240 tcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    |||||||| | ||||||||||| |||||  ||||| || |||||||||||||||||||| | ||||||    
T  21936855 tcatcaatgatatcttctatgcaaaaagctgcttccctaagctgcttcacccaagttttaactccttc 21936788  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 22104429 - 22104358
Alignment:
Q  236 atactcatcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    |||||||||||| | |||||||||||||||||  ||| | || || ||||||||||| ||||||| ||||||    
T  22104429 atactcatcaatgatatcttctatgcgaaaagctgctaccctaagttgcttcacccatgttttgactccttc 22104358  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 2790075 - 2790030
Alignment:
Q  251 atcttctatgcgaaaagaagcttctcttagctgcttcacccaagtt 296  Q
    |||||| |||||||| || |||||||| ||||||||||||||||||    
T  2790075 atcttcaatgcgaaatgatgcttctctcagctgcttcacccaagtt 2790030  T

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Target: chr1 (Bit Score: 46; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 49386835 - 49386900
Alignment:
Q  242 atcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| ||| ||||||    
T  49386835 atcaatcacatcttctatgcgaaaagatgcttctctaagctacttcacccaagttatgactccttc 49386900  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 41947618 - 41947683
Alignment:
Q  242 atcaatcacatcttctatgcgaaaagaagcttctcttagctgcttcacccaagttttgattccttc 307  Q
    |||||||||| ||| |||||||||||| |||||| | |||||||||||||| ||||||| ||||||    
T  41947618 atcaatcacaacttttatgcgaaaagatgcttctttcagctgcttcacccatgttttgactccttc 41947683  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 41947703 - 41947772
Alignment:
Q  330 tcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtctt 399  Q
    |||||| ||||| |||||||||||||||||||  ||  || |||| |||||||||||| |||||| ||||    
T  41947703 tcatcaacagcccttgtgtctgcatccttgagaaaggctttgatgctctcaagttcatgtttgatctctt 41947772  T

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Target: scaffold0691 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 6643 - 6711
Alignment:
Q  330 tcatcagcagcctttgtgtctgcatccttgagtgagaattggatgatctcaagttcatctttgatgtct 398  Q
    ||||| ||||||||| |||||||||| |||||  ||| ||| ||| | |||||||||||||||||||||    
T  6643 tcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtct 6711  T

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