View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595-Insertion-2 (Length: 699)
Name: NF4595-Insertion-2
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Original strand, 39915007 - 39915406
Alignment:
| Q |
8 |
gtaactccattcatatggatatggatgtacaccaaacattttt-atactcattacttagtaaaacaatatatagaacatgcttagttgtcctacacgtat |
106 |
Q |
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| T |
39915007 |
gtaactacattcatatggatatggatgtacaccaaacatttttcatactcattacttagtaaaacaatatatagaacatgcttagttgtcctacacgtat |
39915106 |
T |
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| Q |
107 |
aactcattttattatgaacaatatatcgtgattaagatttaaagataaattaataaattgagatactagtaattgatgggtttaatattaagcccacgct |
206 |
Q |
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| T |
39915107 |
aactcattttattatgaaccatatatcgtgattaagatttaaagataaattaataaattgagatactagtaattaatgggtttaatattaagcccacgct |
39915206 |
T |
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| Q |
207 |
cggttctccgggaatctctctatccctcgagtggaactggcttagactttattgtgtagcgttgtttaaggtacctctttccataatattgatttcagaa |
306 |
Q |
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| T |
39915207 |
cggttctccgggaatctctctatccctcgagtggaactggcttagactttattgtgtagcgttgtttaaggtacctcttcccataatattgatttcagaa |
39915306 |
T |
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| Q |
307 |
aaacaaatactcctacactaaaatacaagtgaaatagggtcaactcatatgaaattcatttcagcaaattaccattaactctaagaactgatatcgagaa |
406 |
Q |
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| T |
39915307 |
aaacaaatactcctacactaaaatacaagtgaaatagggtcaactcatatgaaattcatttcagcaaattaccattaactctaagaactgatatcgagaa |
39915406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 484 - 699
Target Start/End: Original strand, 39915477 - 39915683
Alignment:
| Q |
484 |
tagcaacggattcaaattttatttattttttctttcaaatatgatattttaagttaaagttgttagtgtactattaaatattatatttctgaatacgtaa |
583 |
Q |
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| T |
39915477 |
tagcaacggattcaaattttatttattttttctttcaaatatgatattttaagttaaagt---------actattaaatattatatttctgaatacgtaa |
39915567 |
T |
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| Q |
584 |
ctttcgttattgattccttagccagtgtggatactgattagtgattagcatgattcaaaaaacttttcatattgttattcttagcagtccaatgttctgt |
683 |
Q |
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| T |
39915568 |
ctttcgttattgattccttagccagtgtggatactgattagtgattagcatgattcaaaaaacttttcatattgttattcttagcagtccaatgttctgt |
39915667 |
T |
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| Q |
684 |
tcacccattagtttaa |
699 |
Q |
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| T |
39915668 |
tcacccattagtttaa |
39915683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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