View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4595-Insertion-3 (Length: 689)

Name: NF4595-Insertion-3
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4595-Insertion-3
NF4595-Insertion-3
[»] chr1 (12 HSPs)
chr1 (8-605)||(49553263-49553844)
chr1 (606-689)||(45597624-45597707)
chr1 (605-685)||(13536965-13537045)
chr1 (606-653)||(22425522-22425569)
chr1 (606-653)||(22862601-22862648)
chr1 (606-653)||(51129373-51129420)
chr1 (606-661)||(51609381-51609436)
chr1 (604-642)||(4530191-4530229)
chr1 (606-653)||(4530910-4530957)
chr1 (606-653)||(22424796-22424843)
chr1 (606-648)||(4626346-4626388)
chr1 (608-653)||(22861876-22861921)
[»] chr3 (12 HSPs)
chr3 (605-689)||(53714486-53714570)
chr3 (606-688)||(50304300-50304382)
chr3 (606-689)||(11266981-11267064)
chr3 (606-652)||(11267688-11267734)
chr3 (609-653)||(31891261-31891305)
chr3 (606-653)||(50305469-50305516)
chr3 (606-652)||(44993755-44993801)
chr3 (606-653)||(1127364-1127411)
chr3 (605-646)||(10343329-10343370)
chr3 (604-653)||(23379330-23379379)
chr3 (605-642)||(44384513-44384550)
chr3 (605-653)||(1128227-1128275)
[»] chr7 (6 HSPs)
chr7 (606-653)||(36661685-36661732)
chr7 (606-653)||(29511311-29511358)
chr7 (605-653)||(19431089-19431137)
chr7 (606-642)||(37692844-37692880)
chr7 (606-653)||(28868831-28868878)
chr7 (606-653)||(37693561-37693608)
[»] chr4 (11 HSPs)
chr4 (606-653)||(49708726-49708773)
chr4 (606-653)||(55879794-55879841)
chr4 (606-653)||(32893604-32893651)
chr4 (606-653)||(49346106-49346153)
chr4 (604-653)||(49708017-49708066)
chr4 (606-653)||(37142713-37142760)
chr4 (608-653)||(17088719-17088764)
chr4 (608-653)||(17096694-17096739)
chr4 (604-653)||(17978261-17978310)
chr4 (605-653)||(17979115-17979163)
chr4 (606-642)||(50708992-50709028)
[»] scaffold0070 (1 HSPs)
scaffold0070 (603-665)||(2696-2758)
[»] scaffold0003 (1 HSPs)
scaffold0003 (195-280)||(349533-349619)
[»] chr2 (10 HSPs)
chr2 (606-688)||(6198869-6198951)
chr2 (606-653)||(5141848-5141895)
chr2 (604-647)||(5142561-5142604)
chr2 (606-653)||(17946841-17946888)
chr2 (606-648)||(30902179-30902221)
chr2 (604-653)||(2992000-2992049)
chr2 (605-650)||(17947940-17947985)
chr2 (605-653)||(2992856-2992904)
chr2 (605-653)||(6197914-6197962)
chr2 (606-642)||(38065546-38065582)
[»] chr6 (4 HSPs)
chr6 (606-653)||(1528561-1528608)
chr6 (606-653)||(6841957-6842004)
chr6 (608-653)||(1529412-1529457)
chr6 (606-653)||(6841232-6841279)
[»] chr5 (7 HSPs)
chr5 (607-653)||(18669867-18669913)
chr5 (604-653)||(19855062-19855111)
chr5 (606-653)||(6353684-6353731)
chr5 (606-653)||(19854336-19854383)
chr5 (606-643)||(6354696-6354733)
chr5 (605-653)||(41784621-41784669)
chr5 (605-645)||(41785491-41785531)
[»] chr8 (5 HSPs)
chr8 (606-653)||(511444-511491)
chr8 (606-653)||(8491468-8491515)
chr8 (606-653)||(45163118-45163165)
chr8 (606-639)||(5432845-5432878)
chr8 (605-653)||(788473-788521)


Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 49553263 - 49553844
Alignment:
Q  8 cttctcaccatcacttttgctccaaaacattaagaaaatgctcaagtttagcaattcaattagaagacatgtttgattatgcacttccaaaacattgtta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49553263 cttctcaccatcacttttgctccaaaacattaagaaaatgctcaagtttagcaattcaattagaagacatatttgattatgcacttccaaaacattgtta 49553362  T
Q  108 ctttttatttattagtgataatatttttaaggatttaatttagtggtaaattcttagtacttgaagtttagttggttaccgatatcttgtaggtaaaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||               |||||||||||    
T  49553363 ctttttatttattagtgataatatttttaaggatttaatttagtggtaaattcttagtacttgaagtttggttg---------------taggtaaaatt 49553447  T
Q  208 catttgaaatatgattttatttttaaacatataatataaaaatatgacatgatgctaaataattgaatgatatgtacacatttaaggaaacttcaagaat 307  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||    
T  49553448 catttgaaatatgattctatttttaatcatataatataaaaatatgacatgatgttaaataattgaatgatatgtacacattcaagaaaacttcaagaat 49553547  T
Q  308 accgttatgttcacaagttctagctgaattgacaaaattgtcgaaatggctaggtcgaacgccgtgttcgaacccccgcccctcgacttacatgttacac 407  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||||| |    
T  49553548 accgttatggtcacaagttctagctaaattgacaaaattgtcgaaatggttaggtcgaacgccgtgttcgaacctctacccctcgacttacatgttaccc 49553647  T
Q  408 tgaaatttaaacctaaaattcactcccttatcatagtgaacaatttttaaaaagtgatatcataatttataggctgaataaa-ttttggtccctataagt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49553648 tgaaatttaaacctaaaattcactcccttatcatagtgaacaatttttaaaaagtgatatcataatttataggctgaataaatttttggtccctataagt 49553747  T
Q  507 atgtattttaagggtcttgttaacgagtgtctccgaaagacactcttcaataaataaactcaaatacttcatctaaatgtatctttatcataaatactt 605  Q
    |||||||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  49553748 atgtattttaagggtcttgttaacgagtatcttcg--agacactcttcaataaataaactcaaatatttcatctaaatgtatcttcatcataaatactt 49553844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 606 - 689
Target Start/End: Original strand, 45597624 - 45597707
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatag 689  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  45597624 ggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatag 45597707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 605 - 685
Target Start/End: Complemental strand, 13537045 - 13536965
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagacc 685  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||   || |||||||||||||||    
T  13537045 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatattttttaagcattagatcaaagaaagacc 13536965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 22425569 - 22425522
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  22425569 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22425522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 22862648 - 22862601
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  22862648 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 51129373 - 51129420
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  51129373 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaag 51129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 661
Target Start/End: Original strand, 51609381 - 51609436
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttt 661  Q
    ||||||||||| ||||||||||||||||| |||| || ||||||||||||| ||||    
T  51609381 ggtggcatttagggtgggtgagggaaagagtttctcaacatgggaaagatattttt 51609436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 642
Target Start/End: Original strand, 4530191 - 4530229
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttccca 642  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  4530191 ttggtggcatttagggtgggtgagggaaagaatttccca 4530229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 4530957 - 4530910
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||| ||||| |||||||||||||||||||| ||||| |||||||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaag 4530910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 22424796 - 22424843
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  22424796 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 22424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 648
Target Start/End: Complemental strand, 4626388 - 4626346
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgg 648  Q
    ||||||||||| |||||| |||||||| |||||||||||||||    
T  4626388 ggtggcatttagggtgggagagggaaaaaatttcccaccatgg 4626346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 653
Target Start/End: Original strand, 22861876 - 22861921
Alignment:
Q  608 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  22861876 tggcatttagggtgggtgagggaaagaattccccatcataggaaag 22861921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 605 - 689
Target Start/End: Original strand, 53714486 - 53714570
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatag 689  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53714486 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatag 53714570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 606 - 688
Target Start/End: Original strand, 50304300 - 50304382
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccata 688  Q
    ||||||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||  || ||||||| || |||||||    
T  50304300 ggtggcatttagggtgggtgagggaaataatttcccaccatagaaaagatattttttaaccattagatcaaaaaaggaccata 50304382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 689
Target Start/End: Original strand, 11266981 - 11267064
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatag 689  Q
    ||||||||||| ||| | ||| |||||||||||||||||||| |||||||| |||||||    | |||||||||||||||||||    
T  11266981 ggtggcatttagggtagatgaaggaaagaatttcccaccatgagaaagatattttttaagcactagatcaaagaaagaccatag 11267064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 652
Target Start/End: Complemental strand, 11267734 - 11267688
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaa 652  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  11267734 ggtggcatttagggtgggtgagggaaagaatttcctaccatgggaaa 11267688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 609 - 653
Target Start/End: Original strand, 31891261 - 31891305
Alignment:
Q  609 ggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  31891261 ggcatttagggtgggtgagggaaagaatttccctccatgggaaag 31891305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 50305516 - 50305469
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  50305516 ggtggcatttagggtgggtgaggaaaagaatttcccaccatggaaaag 50305469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 652
Target Start/End: Complemental strand, 44993801 - 44993755
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaa 652  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  44993801 ggtggcatttagggtgggtgagggaaagagtttcctaccatgggaaa 44993755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 1127364 - 1127411
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||| | |||||||||||| |||||    
T  1127364 ggtggcatttagggtgggtgagggaaaaagtttcccaccatgagaaag 1127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 646
Target Start/End: Original strand, 10343329 - 10343370
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccat 646  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  10343329 tggtggcatttagggtgggtgagggaaagatttttccaccat 10343370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 23379330 - 23379379
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||||| ||||||| ||||||||| |||||||| || ||||||    
T  23379330 ttggtggcatttagggtgggtaagggaaagattttcccactataggaaag 23379379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 642
Target Start/End: Original strand, 44384513 - 44384550
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttccca 642  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  44384513 tggtggcatttagggtgggtgaggaaaagaatttccca 44384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 1128275 - 1128227
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| |||||||||| |||||| |||| ||| |||||||||    
T  1128275 tggtggcatttagggtgggtgagagaaagagtttctcactatgggaaag 1128227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 36661685 - 36661732
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36661685 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 36661732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 29511311 - 29511358
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  29511311 ggtggcatttagggtgggtgagggaaagaatttctcaccatggaaaag 29511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 19431089 - 19431137
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| ||||||||||||||||| |||||||  |||||||||    
T  19431089 tggtggcatttagggtgggtgagggaaagagtttcccatgatgggaaag 19431137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 642
Target Start/End: Original strand, 37692844 - 37692880
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttccca 642  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37692844 ggtggcatttagggtgggtgagggaaagaatttccca 37692880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 28868831 - 28868878
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||||    
T  28868831 ggtggcatttagggtgggtgagggaaagaattttcctccatggaaaag 28868878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 37693608 - 37693561
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||| ||||| |||||||||||||||||||| ||||| |||||||||    
T  37693608 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaag 37693561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 49708773 - 49708726
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  49708773 ggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaag 49708726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 55879794 - 55879841
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  55879794 ggtggcatttagggtgggtgagggaaataatttcccaccatgggaaag 55879841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 32893604 - 32893651
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  32893604 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 32893651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 49346106 - 49346153
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  49346106 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 49346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 49708017 - 49708066
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||| ||||    
T  49708017 ttggtggcatttagggtgggtgagggaaagaattccccatcatggaaaag 49708066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 37142760 - 37142713
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| |||||||| |||||||| ||||||| ||||||||||    
T  37142760 ggtggcatttagggtgggtgggggaaagagtttcccaacatgggaaag 37142713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 17088764 - 17088719
Alignment:
Q  608 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  17088764 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17088719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 17096739 - 17096694
Alignment:
Q  608 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  17096739 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17096694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 17978261 - 17978310
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||||| |||||| | |||||||| ||||||| ||||||||||    
T  17978261 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaag 17978310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 17979163 - 17979115
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||| ||||    
T  17979163 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaag 17979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 642
Target Start/End: Original strand, 50708992 - 50709028
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttccca 642  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  50708992 ggtggcatttagggtgggtgaggcaaagaatttccca 50709028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 665
Target Start/End: Complemental strand, 2758 - 2696
Alignment:
Q  603 cttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaac 665  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||| ||| ||| ||||||||    
T  2758 cttggtggcatttagggttggtgagggaaagaattccccaccatggtaaatatattttttaac 2696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 349533 - 349619
Alignment:
Q  195 tgtaggtaaaattcatttgaaatatgattttatttttaaacata-taatataaaaatatgacatgatgctaaataattgaatgatat 280  Q
    |||| |||||| |||||| |||| |||||| ||| ||||| | | ||||||||||||||||||||||| |||||||||| |||||||    
T  349533 tgtatgtaaaactcatttaaaatttgatttgattcttaaataaaataatataaaaatatgacatgatgttaaataattggatgatat 349619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 688
Target Start/End: Complemental strand, 6198951 - 6198869
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccata 688  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||| |  ||| ||||  |||||||||| ||||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcata 6198869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 5141848 - 5141895
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||    
T  5141848 ggtggcatttagggtgggtgagggaaagaattccccatcatgggaaag 5141895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 647
Target Start/End: Complemental strand, 5142604 - 5142561
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatg 647  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  5142604 ttggtggcatttagggtgggtgagggaaagaattttccaccatg 5142561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 17946841 - 17946888
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  17946841 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 17946888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 648
Target Start/End: Complemental strand, 30902221 - 30902179
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgg 648  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||    
T  30902221 ggtggcatttagggtgggtgagggaaagagtttcctaccatgg 30902179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 2992000 - 2992049
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||||| |||||| | |||||||| ||||||| ||||||||||    
T  2992000 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaag 2992049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 17947985 - 17947940
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatggga 650  Q
    |||||||||||| | ||||||||||||||| |||||||| ||||||    
T  17947985 tggtggcatttaggatgggtgagggaaagagtttcccactatggga 17947940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 2992904 - 2992856
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||| ||||    
T  2992904 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaag 2992856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 6197914 - 6197962
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| ||||||| |||||||||||| ||||  |||||||||    
T  6197914 tggtggcatttagggtgggtaagggaaagaattccccattatgggaaag 6197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 642
Target Start/End: Original strand, 38065546 - 38065582
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttccca 642  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  38065546 ggtggcatttagggtgggtgagggaaagagtttccca 38065582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 1528561 - 1528608
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaag 1528608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 6842004 - 6841957
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  6842004 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 6841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 608 - 653
Target Start/End: Complemental strand, 1529457 - 1529412
Alignment:
Q  608 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttcccaccatgagaaag 1529412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 6841232 - 6841279
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  6841232 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 6841279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 607 - 653
Target Start/End: Original strand, 18669867 - 18669913
Alignment:
Q  607 gtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||    
T  18669867 gtggcatttagggtgggtgagggaaagagtttcccaccatgagaaag 18669913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 653
Target Start/End: Complemental strand, 19855111 - 19855062
Alignment:
Q  604 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  19855111 ttggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 19855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 6353684 - 6353731
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||||    
T  6353684 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 6353731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 19854336 - 19854383
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||   ||||||||||||||||||||||||||| ||||||    
T  19854336 ggtggcatttagaatgggtgagggaaagaatttcccaccataggaaag 19854383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 643
Target Start/End: Complemental strand, 6354733 - 6354696
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccac 643  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6354733 ggtggcatttagggtgggtgagggaaagattttcccac 6354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 41784621 - 41784669
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    |||||||||||| ||||||||||||||||| ||| | || |||||||||    
T  41784621 tggtggcatttagggtgggtgagggaaagagttttctactatgggaaag 41784669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 645
Target Start/End: Complemental strand, 41785531 - 41785491
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccacca 645  Q
    |||||||||||| ||||||||||||||||| |||| |||||    
T  41785531 tggtggcatttagggtgggtgagggaaagagtttctcacca 41785491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 511491 - 511444
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||| ||||||||||||||| ||| ||||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaag 511444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Original strand, 8491468 - 8491515
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||    
T  8491468 ggtggcatttagggtgggtgagggaaagattttcccactataggaaag 8491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 653
Target Start/End: Complemental strand, 45163165 - 45163118
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||||    
T  45163165 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 45163118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 639
Target Start/End: Original strand, 5432845 - 5432878
Alignment:
Q  606 ggtggcatttacggtgggtgagggaaagaatttc 639  Q
    ||||||||||| ||||||||||||||||||||||    
T  5432845 ggtggcatttagggtgggtgagggaaagaatttc 5432878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 788521 - 788473
Alignment:
Q  605 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 653  Q
    ||||| |||||| ||||||||||||||||| |||||||  |||||||||    
T  788521 tggtgacatttagggtgggtgagggaaagagtttcccatgatgggaaag 788473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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