View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595-Insertion-5 (Length: 521)
Name: NF4595-Insertion-5
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Complemental strand, 7429819 - 7429306
Alignment:
| Q |
8 |
ttatacatctattccccaggacctaatagctggtgggacagatacctcttctgtaataatagaatgggcaatttctgagcttgtgaaaaggccagagatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7429819 |
ttatacatctattccccaggacctaatagctggtgggacagatacctcttctgtaataatagaatgggcaatttctgagcttgtgaaaaggccagagatt |
7429720 |
T |
|
| Q |
108 |
atcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgatgagaaagacattgtcaatttaccttatgtttatgcaattgcta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7429719 |
atcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgcta |
7429620 |
T |
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| Q |
208 |
aagaaacaatgaggcttcatcctgtaacaccaatgttagtaccaagagaagctactgagaattgcaatgttgatggttatgatataccaaaagggactat |
307 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7429619 |
aagaaacaatgaggcttcatcctgtgacaccaatgttagtgccaagagaagctactgagaattgcaatgttgatggttatgatataccaaaagggactat |
7429520 |
T |
|
| Q |
308 |
gattcttgtcaatacttggactattggaagagattctgatagttgggataatccatatgaatttataccagaaaggtttattaacaatgatatagatata |
407 |
Q |
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| T |
7429519 |
gattcttgtcaatacttggacaattggaagagattctgatagttgggataatccatatgaatttataccagagaggtttattaacaatgatatagatata |
7429420 |
T |
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| Q |
408 |
ataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggcta |
507 |
Q |
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| T |
7429419 |
ataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggcta |
7429320 |
T |
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| Q |
508 |
atttgttgcatgga |
521 |
Q |
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| T |
7429319 |
acttgttgcatgga |
7429306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 521
Target Start/End: Complemental strand, 7423410 - 7422900
Alignment:
| Q |
8 |
ttatacatctattccccaggacctaatagctggtgggacagatacctcttctgtaataatagaatgggcaatttctgagcttgtgaaaaggccagagatt |
107 |
Q |
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||||| ||||||| | ||||| ||||||| |||||||||||||| ||| | |||| | ||||||||||||| || ||||||||||||| |||||||||| |
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| T |
7423410 |
ttatatatctatttcgtaggacttaatagcaggtgggacagatacatctacagtaacagtagaatgggcaatctccgagcttgtgaaaaagccagagatt |
7423311 |
T |
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| Q |
108 |
atcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgatgagaaagacattgtcaatttaccttatgtttatgcaattgcta |
207 |
Q |
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|||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7423310 |
atcaagagagctacggaggaactagacaaagtaataggaagagatagatgggttgaagagaaagacattgtcaatttaccttatgtttttgcaattgcta |
7423211 |
T |
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| Q |
208 |
aagaaacaatgaggcttcatcctgtaacaccaatgttagtaccaagagaagctactgagaattgcaatgttgatggttatgatataccaaaagggactat |
307 |
Q |
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| T |
7423210 |
aagaaacaatgaggcttcatcctgcagcaccattgttagtgccaagagaagctagtgaggattgcaatgttgatggttatgatatcccaaaagggactct |
7423111 |
T |
|
| Q |
308 |
gattcttgtcaatacttggactattggaagagattctgatagttgggataatccatatgaatttataccagaaaggtttattaacaatgatatagatata |
407 |
Q |
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| T |
7423110 |
aattcttgtcaatacttggacaattggaagagatcctaatgtttgggacaatccatatgagtttatacctgagaggtttattggtaataatatagat--- |
7423014 |
T |
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| Q |
408 |
ataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctggttatcctcttggtcttaaggtggttcaatcaagtttggcta |
507 |
Q |
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| T |
7423013 |
gtaaaaggacatgattatgagttgttgccatttggtactggtagaaggatgtgtcctggttatcctcttggtcttaaggtgatacaatcaagtttggcta |
7422914 |
T |
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| Q |
508 |
atttgttgcatgga |
521 |
Q |
| |
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|||||||||||||| |
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| T |
7422913 |
atttgttgcatgga |
7422900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 67 - 521
Target Start/End: Complemental strand, 7415692 - 7415241
Alignment:
| Q |
67 |
tagaatgggcaatttctgagcttgtgaaaaggccagagattatcaagagagctacagaggaactagatagagtaatagggagagatagatgggttgatga |
166 |
Q |
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||||||||||||| || ||||| || | || |||||||| |||||| ||| || ||||| ||||||||||| ||||| | ||||||||||||||| || |
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| T |
7415692 |
tagaatgggcaatctccgagctggttagaaaaccagagatcttcaagaaagcaaccgaggagctagatagagtgataggaaaagatagatgggttgaaga |
7415593 |
T |
|
| Q |
167 |
gaaagacattgtcaatttaccttatgtttatgcaattgctaaagaaacaatgaggcttcatcctgtaacaccaatgttagtaccaagagaagctactgag |
266 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||| | ||||| ||| ||||||||| ||| |
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| T |
7415592 |
gaaagacattgcgaatttaccttatgtttacgcaattgctaaagaaacaatgaggctacatcccgtggcaccatttttagtgccacgagaagctagagag |
7415493 |
T |
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| Q |
267 |
aattgcaatgttgatggttatgatataccaaaagggactatgattcttgtcaatacttggactattggaagagattctgatagttgggataatccatatg |
366 |
Q |
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| T |
7415492 |
gattgcaaagttgatggttacgatattcccaaagggactatagttcttgtcaatacttggacaattgcaagagattctgaggtttgggagaatccatatg |
7415393 |
T |
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| Q |
367 |
aatttataccagaaaggtttattaacaatgatatagatataataaaaggacatgattataagatgttgccattaggtgctggtagaaggatgtgtcctgg |
466 |
Q |
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||||||| || || |||||| || || ||||||||| ||||||||||||||| | || |||| ||||| |||||||||||||||||||||||||| |
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| T |
7415392 |
aatttatgcctgagaggtttcttggtaaagatatagat---gtaaaaggacatgattttgagttgttaccatttggtgctggtagaaggatgtgtcctgg |
7415296 |
T |
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| Q |
467 |
ttatcctcttggtcttaaggtggttcaatcaagtttggctaatttgttgcatgga |
521 |
Q |
| |
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||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
7415295 |
ttaccctcttggtattaaggtgattcaaacaagtttggctaatttgttgcatgga |
7415241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 29586753 - 29586801
Alignment:
| Q |
268 |
attgcaatgttgatggttatgatataccaaaagggactatgattcttgt |
316 |
Q |
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| T |
29586753 |
attgcaatgtttgtggttttgatataccaaaagggacaatgcttcttgt |
29586801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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