View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595-Insertion-6 (Length: 510)
Name: NF4595-Insertion-6
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 33426666 - 33426162
Alignment:
| Q |
8 |
gtgtgggcacatgcaaactcaaacatgcatgttgcatataccaaaggattagaaaaggaaaatgatatacattgaaaatgttgtatgtattcagtgaagc |
107 |
Q |
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| T |
33426666 |
gtgtgggcacatgcaaactcaaacatgcatgttgcata--ccaaaggattagaaaaggaaaatgatttacattgaaaatgttgtatgtatttagtgaagc |
33426569 |
T |
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| Q |
108 |
ctaagtttcatatcaagatatatcagccacaacattatcttagtatatcagatttccaaaattttattctgtcagatgtatcactcacacggggacttga |
207 |
Q |
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| T |
33426568 |
ctaagtttcatatcaagatatatcagccacaacattatcttagtatatcagatttccaaaattttattctgtcagatgtatcactcacacgggaacttga |
33426469 |
T |
|
| Q |
208 |
gcctannnnnnnnaaagagctaaatgtaacttccacgcgaaagtgtagaattgatctatacaagaggttgatctctcctaacaaatattttttcatacac |
307 |
Q |
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| T |
33426468 |
gcctatttttttcaaagagctaaatgtaacttccacgcgaaagtgcggaattgatctatacaagaggttgatctctcctaacaaatattttttcatacac |
33426369 |
T |
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| Q |
308 |
aata--tatgagtcaaataaaaaagaaaatagttaaatgattcgagtatctattatctatgtcgcactatgttggttgagtctaattaactttcagtatg |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33426368 |
aatagatatgagtcaaataaaaaagaaaatagttaaatgattcaagtatttactatctatgtcgcactatgttggttgagtctaattaactttcactatg |
33426269 |
T |
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| Q |
406 |
gttatgactaaacaattaattatat--gaggaacttgaagattcaattcatatcaatttaataagggtttttctcacaagtattcttagaggatccacat |
503 |
Q |
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|||||||||||| ||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33426268 |
gttatgactaaataattaatgatatgagagaaacttgaagattcaattcatattaatttaataagggtttttctcacaagtattcttagaggattcacat |
33426169 |
T |
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| Q |
504 |
acactca |
510 |
Q |
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| T |
33426168 |
acactca |
33426162 |
T |
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