View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4595-Insertion-7 (Length: 474)
Name: NF4595-Insertion-7
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Complemental strand, 21445321 - 21444855
Alignment:
| Q |
8 |
ccaatagcagtggcatctcaagaacccttttgcgcttatccttcgttacttgctgaaaagagtgagaagaaactatcatcaaatggtagagccaaattaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445321 |
ccaatagcagtggcatctcaagaacccttttgcgcttatccttcgttacttgcagaaaagagtgagaagaaactatcatcaaatggtagagccaaattaa |
21445222 |
T |
|
| Q |
108 |
gaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctcaaaggtagtagggtattctctctttaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445221 |
gaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctcaaaggtagtagggtattctctctttaat |
21445122 |
T |
|
| Q |
208 |
acaattatcacaaccaaacagaatttggnnnnnnnggtagctttttcaataagctgtattacaaattacaatgtcctgcatgtaaatactaaagtgacca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445121 |
acaattatcacaaccaaacagaatttggtttttttggtagctttttcaataagctgtattacaaattacaatgtcctgcatgtaaatactaaagtgacca |
21445022 |
T |
|
| Q |
308 |
aaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaaatatatcttattgttatactggtttccatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21445021 |
aaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaaatatatcttattgttatactggtttccatt |
21444922 |
T |
|
| Q |
408 |
ttggtttttgctttgttctaaagaatatataatttagacacattatggtttcaacattatttgacaa |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21444921 |
ttggtttttgctttgttctaaagaatatataatttagacacattatggtttcatcattatttgacaa |
21444855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University