View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4595-Insertion-8 (Length: 445)
Name: NF4595-Insertion-8
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595-Insertion-8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 143 - 435
Target Start/End: Original strand, 20060304 - 20060600
Alignment:
| Q |
143 |
gaggcagagtacaaagctttggcctcaactaaatgtgaaattcaatggattctctacctgctccatgaccttcacatcacttgttctaagctccctgtcc |
242 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20060304 |
gaggcagaatacaaagctttggcctcagctacatgtgaaattcaatggattctctacctgctccatgaccttcacatcacttgttctaagctccctgtcc |
20060403 |
T |
|
| Q |
243 |
tttattgtgatatctagagtgatctccatattgctgcaaacccagtttttcatgaaaggagcagacatttgaagattggctgtcatattgttagagagaa |
342 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
20060404 |
tttattgtgataactagagtgatttccatattgctgcaaacccaatttttcatgaaaggagcaaacatttggagattgactgtcatattattagagagaa |
20060503 |
T |
|
| Q |
343 |
actataactggtgttatgaagttgtttccagtttcttctcaagaccaaatatctttgatg----tatatataactcatgtaacatacaatttattca |
435 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
20060504 |
actgtaactggtgttatgaagttgtttccagtttcttctcaagaccaaatatctttgatgtatatatatataactcatgtaacaaacaattcattca |
20060600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 20060210 - 20060307
Alignment:
| Q |
9 |
aaggattttctgatgctgattgggctggctgcttggatacaagaagatcaactactggacaatgcttcttcttaggtcattccctcatttcttggagg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20060210 |
aaggattttctgatgctgattgggctggctgcttggatacaagaagatcaattactggacaatgcttcttcttaggtcattccctcatttcttggagg |
20060307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 392
Target Start/End: Original strand, 22645395 - 22645779
Alignment:
| Q |
9 |
aaggattttctgatgctgattgggctggctgcttggatacaagaagatcaactactggacaatgcttcttcttaggtcattccctcatttcttggaggac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| | |||| ||||| ||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
22645395 |
aaggattttctgatgctgattgggctggatgtttggatacaaggaaatcagtcactggtcaatgcttctttttaggtaactccctcatttcttggaggac |
22645494 |
T |
|
| Q |
109 |
taagaagcaaaacactatctccatattttcttatgaggcagagtacaaagctttggcctcaactaaatgtgaaattcaatggattctctacctgctccat |
208 |
Q |
| |
|
||||| |||| |||| |||| | | || | ||||||||| |||| |||||||| ||| ||| |||||||||||||||| ||||||| |||| || |
|
|
| T |
22645495 |
caagaaacaaaccactgtctctaggtcctcatctgaggcagaatacagggctttggcatcagctacatgtgaaattcaatggcttctctatttgctgaat |
22645594 |
T |
|
| Q |
209 |
gaccttcacatcacttgttctaagctccctgtcctttattgtgatatctagagtgatctccatattgctgcaaacccagtttttcatgaaaggagcagac |
308 |
Q |
| |
|
|| |||||||| |||||||| |||| ||||| || |||||||||| | |||||| || ||||||||||| ||||| || || ||||| || | || || |
|
|
| T |
22645595 |
gatcttcacattacttgttccaagcctcctgtgctctattgtgataaccagagtgcccttcatattgctgccaaccctgtcttccatgagagaaccaaac |
22645694 |
T |
|
| Q |
309 |
atttgaagattggctgtcatattgttagagagaaactataa-ctggtgttatgaagttgtttccagtttcttctcaagaccaaat |
392 |
Q |
| |
|
||||| |||||| |||||||||||||||||| ||| | || |||||||| |||| | | ||||||||||||||||| ||||| |
|
|
| T |
22645695 |
atttggagattgactgtcatattgttagagaaaaattgcaagctggtgttctgaaacttctcccagtttcttctcaagatcaaat |
22645779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 192
Target Start/End: Complemental strand, 23165650 - 23165521
Alignment:
| Q |
63 |
ctggacaatgcttcttcttaggtcattccctcatttcttggaggactaagaagcaaaacactatctccatattttcttatgaggcagagtacaaagcttt |
162 |
Q |
| |
|
|||| ||||| ||||||||||| |||| | || |||||||| ||||||||||||| |||| |||||| || ||||| ||| || ||||| | |||||| |
|
|
| T |
23165650 |
ctggccaatgtttcttcttaggcaattcattgatctcttggagaactaagaagcaaatcactgtctccaaatcttcttctgaagctgagtatagagcttt |
23165551 |
T |
|
| Q |
163 |
ggcctcaactaaatgtgaaattcaatggat |
192 |
Q |
| |
|
|| || ||| |||||| |||||||||| |
|
|
| T |
23165550 |
agcttctgctacatgtgagcttcaatggat |
23165521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 26464820 - 26464747
Alignment:
| Q |
229 |
taagctccctgtcctttattgtgatatctagagtgatctccatattgctgcaaacccagtttttcatgaaagga |
302 |
Q |
| |
|
|||||| | ||| ||||||||||||| | |||||| ||| || ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
26464820 |
taagcttcatgtgctttattgtgataaccagagtgctcttcacattgcagcaaatccagtgtttcatgaaagga |
26464747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 23959175 - 23959243
Alignment:
| Q |
11 |
ggattttctgatgctgattgggctggctgcttggatacaagaagatcaactactggacaatgcttcttc |
79 |
Q |
| |
|
||||| || ||||| ||||||||||| ||||||||| | |||||||| | | |||| |||||||||||| |
|
|
| T |
23959175 |
ggattctcagatgcagattgggctggatgcttggattctagaagatccatttctggccaatgcttcttc |
23959243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31274092 - 31274132
Alignment:
| Q |
17 |
tctgatgctgattgggctggctgcttggatacaagaagatc |
57 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||||||| |
|
|
| T |
31274092 |
tctgatgctgactgggctggctgcttagattcaagaagatc |
31274132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University