View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4595-Insertion-9 (Length: 302)

Name: NF4595-Insertion-9
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4595-Insertion-9
NF4595-Insertion-9
[»] chr4 (41 HSPs)
chr4 (25-268)||(9046325-9046568)
chr4 (115-268)||(28880019-28880162)
chr4 (164-264)||(49936569-49936669)
chr4 (164-232)||(48620356-48620424)
chr4 (164-242)||(27143245-27143323)
chr4 (172-242)||(56117957-56118027)
chr4 (175-268)||(24662657-24662750)
chr4 (159-232)||(40423019-40423092)
chr4 (172-232)||(31340842-31340902)
chr4 (164-232)||(46669891-46669959)
chr4 (116-232)||(47669829-47669945)
chr4 (164-232)||(52430521-52430589)
chr4 (170-232)||(51431017-51431079)
chr4 (164-237)||(30307436-30307509)
chr4 (164-268)||(45022447-45022554)
chr4 (161-242)||(48417547-48417627)
chr4 (164-232)||(54806537-54806606)
chr4 (164-232)||(3126958-3127026)
chr4 (164-232)||(7182137-7182205)
chr4 (164-232)||(13270020-13270088)
chr4 (164-232)||(17873263-17873331)
chr4 (164-232)||(32060713-32060781)
chr4 (164-232)||(32648950-32649018)
chr4 (164-232)||(37756669-37756737)
chr4 (164-232)||(41363758-41363826)
chr4 (172-232)||(47063757-47063817)
chr4 (164-232)||(49404569-49404637)
chr4 (164-242)||(13984909-13984988)
chr4 (164-242)||(8828146-8828224)
chr4 (87-149)||(39192264-39192326)
chr4 (166-232)||(48830760-48830826)
chr4 (172-242)||(55813563-55813633)
chr4 (116-237)||(8827761-8827882)
chr4 (175-232)||(31530097-31530154)
chr4 (172-237)||(42954683-42954748)
chr4 (164-232)||(16535758-16535826)
chr4 (164-232)||(21730273-21730341)
chr4 (164-216)||(32948488-32948540)
chr4 (164-232)||(38317174-38317242)
chr4 (164-232)||(38366094-38366162)
chr4 (172-244)||(39799467-39799539)
[»] chr7 (24 HSPs)
chr7 (107-232)||(1277948-1278073)
chr7 (116-242)||(33187783-33187908)
chr7 (164-232)||(41002197-41002265)
chr7 (164-232)||(43665115-43665183)
chr7 (26-69)||(30301824-30301867)
chr7 (164-232)||(5967999-5968067)
chr7 (161-265)||(38137995-38138099)
chr7 (164-232)||(38991419-38991487)
chr7 (164-232)||(43188924-43188992)
chr7 (164-232)||(45066790-45066858)
chr7 (175-242)||(44487271-44487338)
chr7 (159-217)||(31891338-31891396)
chr7 (165-267)||(43348150-43348252)
chr7 (190-267)||(13697373-13697450)
chr7 (175-232)||(28437488-28437545)
chr7 (175-232)||(33406578-33406635)
chr7 (175-232)||(33810158-33810215)
chr7 (141-242)||(42266943-42267044)
chr7 (164-232)||(3658457-3658525)
chr7 (164-232)||(12624320-12624388)
chr7 (164-232)||(23620740-23620807)
chr7 (198-242)||(24923330-24923374)
chr7 (166-210)||(34399018-34399062)
chr7 (164-232)||(42620298-42620366)
[»] chr6 (17 HSPs)
chr6 (107-267)||(22817252-22817411)
chr6 (164-232)||(33212387-33212455)
chr6 (164-242)||(2502302-2502380)
chr6 (164-242)||(20381802-20381880)
chr6 (167-268)||(13120332-13120433)
chr6 (159-232)||(23095074-23095147)
chr6 (164-267)||(597046-597147)
chr6 (164-232)||(24734947-24735015)
chr6 (164-232)||(26574341-26574409)
chr6 (164-232)||(34914694-34914762)
chr6 (164-242)||(8439331-8439409)
chr6 (189-231)||(27793554-27793596)
chr6 (164-229)||(1029360-1029425)
chr6 (164-260)||(4464992-4465089)
chr6 (164-232)||(5825399-5825467)
chr6 (164-232)||(26481077-26481145)
chr6 (190-242)||(33677116-33677168)
[»] chr1 (42 HSPs)
chr1 (107-267)||(36269753-36269912)
chr1 (164-268)||(36325782-36325886)
chr1 (172-262)||(34552004-34552094)
chr1 (164-232)||(17688406-17688474)
chr1 (166-242)||(35619450-35619526)
chr1 (164-232)||(43036269-43036337)
chr1 (116-231)||(32287599-32287714)
chr1 (159-237)||(25561259-25561337)
chr1 (172-242)||(43530234-43530304)
chr1 (164-233)||(43571910-43571979)
chr1 (164-232)||(7964041-7964109)
chr1 (164-232)||(13255411-13255479)
chr1 (164-232)||(23871409-23871477)
chr1 (164-232)||(27500051-27500119)
chr1 (164-232)||(32299169-32299237)
chr1 (164-232)||(42488573-42488641)
chr1 (175-223)||(44545166-44545214)
chr1 (164-232)||(47206370-47206438)
chr1 (164-232)||(49102918-49102986)
chr1 (164-227)||(6538025-6538088)
chr1 (178-232)||(261868-261922)
chr1 (170-232)||(1523668-1523730)
chr1 (166-232)||(2175403-2175469)
chr1 (170-232)||(12293885-12293947)
chr1 (166-232)||(13061343-13061409)
chr1 (166-232)||(42806239-42806305)
chr1 (164-230)||(47905637-47905703)
chr1 (164-242)||(52331116-52331194)
chr1 (175-232)||(14153189-14153246)
chr1 (192-237)||(34918683-34918728)
chr1 (164-237)||(36668590-36668663)
chr1 (87-232)||(39889604-39889749)
chr1 (167-232)||(41432708-41432773)
chr1 (164-232)||(896441-896509)
chr1 (164-232)||(2925881-2925949)
chr1 (164-232)||(6015498-6015566)
chr1 (164-232)||(17675263-17675331)
chr1 (172-232)||(20712162-20712222)
chr1 (125-153)||(23799885-23799913)
chr1 (164-232)||(42161999-42162067)
chr1 (172-232)||(50162210-50162270)
chr1 (164-232)||(50402808-50402876)
[»] chr3 (40 HSPs)
chr3 (165-242)||(52620771-52620848)
chr3 (116-242)||(7302103-7302229)
chr3 (114-267)||(4247134-4247287)
chr3 (117-242)||(40674127-40674252)
chr3 (116-232)||(46891405-46891521)
chr3 (116-237)||(53888506-53888627)
chr3 (167-268)||(54126330-54126431)
chr3 (164-232)||(38526220-38526288)
chr3 (172-242)||(3457536-3457607)
chr3 (137-232)||(7661076-7661171)
chr3 (164-231)||(36637867-36637933)
chr3 (164-242)||(19148234-19148312)
chr3 (164-242)||(48444572-48444650)
chr3 (175-232)||(17642667-17642724)
chr3 (164-237)||(39114905-39114978)
chr3 (143-232)||(54372522-54372611)
chr3 (164-232)||(2420726-2420794)
chr3 (167-231)||(10757510-10757574)
chr3 (164-232)||(35283154-35283222)
chr3 (164-232)||(38593019-38593087)
chr3 (164-232)||(39499265-39499333)
chr3 (164-232)||(41961923-41961991)
chr3 (164-232)||(43007468-43007536)
chr3 (164-232)||(47714619-47714687)
chr3 (164-232)||(47789392-47789460)
chr3 (164-232)||(55439651-55439719)
chr3 (172-242)||(11500176-11500247)
chr3 (179-242)||(21494804-21494867)
chr3 (164-259)||(49304275-49304370)
chr3 (184-237)||(2927931-2927984)
chr3 (107-231)||(3537218-3537340)
chr3 (175-232)||(25428746-25428803)
chr3 (164-237)||(29623303-29623376)
chr3 (159-232)||(30121468-30121541)
chr3 (164-232)||(30131832-30131900)
chr3 (164-232)||(31178193-31178261)
chr3 (164-268)||(32720992-32721095)
chr3 (164-232)||(42583245-42583312)
chr3 (164-232)||(46017272-46017340)
chr3 (176-232)||(49860915-49860971)
[»] chr5 (18 HSPs)
chr5 (144-267)||(4841620-4841743)
chr5 (116-232)||(3081278-3081393)
chr5 (172-242)||(1935043-1935113)
chr5 (164-237)||(43496822-43496895)
chr5 (175-242)||(26018819-26018886)
chr5 (164-242)||(6491251-6491329)
chr5 (189-242)||(28154782-28154835)
chr5 (164-232)||(17092964-17093032)
chr5 (164-231)||(10295550-10295617)
chr5 (164-231)||(27480119-27480186)
chr5 (159-242)||(29799699-29799782)
chr5 (164-231)||(35708709-35708776)
chr5 (170-232)||(33718254-33718316)
chr5 (193-242)||(29709606-29709655)
chr5 (189-242)||(35704982-35705035)
chr5 (164-232)||(2021047-2021115)
chr5 (164-232)||(26149670-26149738)
chr5 (164-232)||(38302304-38302372)
[»] chr2 (31 HSPs)
chr2 (116-242)||(42946660-42946786)
chr2 (164-242)||(11522116-11522194)
chr2 (164-242)||(16465095-16465173)
chr2 (164-232)||(14008275-14008343)
chr2 (164-268)||(36030860-36030964)
chr2 (159-242)||(9087401-9087484)
chr2 (141-232)||(44656696-44656787)
chr2 (107-232)||(12941743-12941869)
chr2 (116-242)||(31584703-31584828)
chr2 (107-232)||(8555722-8555847)
chr2 (164-237)||(13767485-13767558)
chr2 (193-242)||(41503250-41503299)
chr2 (164-232)||(3119798-3119866)
chr2 (164-232)||(4042031-4042099)
chr2 (164-232)||(8410876-8410944)
chr2 (164-232)||(13765885-13765953)
chr2 (164-268)||(16625715-16625818)
chr2 (164-232)||(18826172-18826240)
chr2 (164-232)||(36567224-36567292)
chr2 (164-242)||(13767269-13767347)
chr2 (164-230)||(44953968-44954034)
chr2 (175-232)||(3038893-3038950)
chr2 (165-242)||(4666203-4666280)
chr2 (175-232)||(8990909-8990966)
chr2 (175-232)||(44020417-44020474)
chr2 (159-263)||(9087613-9087717)
chr2 (164-232)||(18780451-18780519)
chr2 (164-232)||(31899302-31899370)
chr2 (164-232)||(38293955-38294023)
chr2 (164-232)||(40357524-40357592)
chr2 (164-232)||(44137202-44137270)
[»] chr8 (29 HSPs)
chr8 (164-237)||(8948692-8948765)
chr8 (159-232)||(41455321-41455394)
chr8 (168-242)||(13406498-13406572)
chr8 (159-232)||(16024519-16024592)
chr8 (164-268)||(16424205-16424309)
chr8 (164-232)||(34349782-34349850)
chr8 (164-242)||(27085415-27085493)
chr8 (164-233)||(10878727-10878796)
chr8 (164-232)||(32220-32288)
chr8 (107-227)||(1839771-1839891)
chr8 (164-232)||(1941999-1942067)
chr8 (164-232)||(3404520-3404588)
chr8 (164-232)||(9054457-9054525)
chr8 (164-268)||(13258553-13258657)
chr8 (116-232)||(31297294-31297410)
chr8 (164-232)||(34272582-34272650)
chr8 (107-232)||(25033390-25033515)
chr8 (119-232)||(29612013-29612126)
chr8 (175-232)||(36102836-36102893)
chr8 (164-229)||(43733069-43733134)
chr8 (164-232)||(2474713-2474781)
chr8 (166-242)||(7079930-7080006)
chr8 (184-232)||(11876960-11877008)
chr8 (184-232)||(11891967-11892015)
chr8 (172-268)||(13537417-13537513)
chr8 (172-268)||(13626965-13627061)
chr8 (164-232)||(13865038-13865106)
chr8 (164-232)||(34148525-34148593)
chr8 (164-232)||(38404408-38404476)
[»] scaffold0717 (1 HSPs)
scaffold0717 (164-232)||(1645-1713)
[»] scaffold0028 (1 HSPs)
scaffold0028 (164-232)||(35401-35469)
[»] scaffold0059 (1 HSPs)
scaffold0059 (164-230)||(17456-17521)
[»] scaffold0263 (1 HSPs)
scaffold0263 (164-237)||(12200-12273)


Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 25 - 268
Target Start/End: Complemental strand, 9046568 - 9046325
Alignment:
Q  25 agaacaagtggaagaaatataggacattgagatgagaagactttgaggagnnnnnnnnnnnncataatacaaaatcttaataatttagggtaactaaaat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||  |||||||||||||||||||||||    
T  9046568 agaacaagtggaagaaatataggacattgagatgagaagactttgaggagttcatttttcttcataatacaaaattctaataatttagggtaactaaaat 9046469  T
Q  125 attgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatatt 224  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  9046468 attgtattgaatgagagttttggaaggttttatagagtttatatgaattcttcaaattcaatatatgttgttaaaatattcttaaagtaaaaaatatatt 9046369  T
Q  225 aatcataatcattgatttgtagttctttagaaaaatactctttc 268  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  9046368 aatcataatcattgattagtcgttctttagaaaaatactctttc 9046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 268
Target Start/End: Original strand, 28880019 - 28880162
Alignment:
Q  115 taactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaa 214  Q
    |||||||||||||||||||||||||  ||||||||| |||          |||||| ||||||||||| |||| ||||||||| |||||||||||| | |    
T  28880019 taactaaaatattgtattgaatgaggattttggaggattt----------atatgaattcttcaaatttaatatatgttgttataatattcttaaaatta 28880108  T
Q  215 aaaacatattaatcataatcattgatttgtagttctttagaaaaatactctttc 268  Q
    |||| ||||||||||||| |||| |||| |   ||| || ||||||||||||||    
T  28880109 aaaatatattaatcataaacattaatttatcactctctaaaaaaatactctttc 28880162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 264
Target Start/End: Original strand, 49936569 - 49936669
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| |||||||||||||||  ||||||||| |||||||||||| | ||||| ||||||||||||| |||| |||| |  |||| || |||||||||    
T  49936569 tatatgaattcttcaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatact 49936668  T
Q  264 c 264  Q
    |    
T  49936669 c 49936669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 48620356 - 48620424
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  48620356 tatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 48620424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 27143245 - 27143323
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| || |||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  27143245 tatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaattt 27143323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 56117957 - 56118027
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||| ||||| || | ||||||||| |||||||||||| ||||||| |||| ||||||||||||||||||    
T  56117957 ttctttaaatttaacatatgttgttataatattcttaaaataaaaaatatatgaatcataatcattgattt 56118027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 24662750 - 24662657
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactctttc 268  Q
    |||||||| ||||||||| |||| |||||| ||||| | ||||| ||||||||||||| ||||||||| |  |||| || |||| |||||||||    
T  24662750 ttcaaatttaatacatgtagttataatatttttaaaattaaaaaaatattaatcataagcattgatttatcattctctaaaaaattactctttc 24662657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 40423092 - 40423019
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||| ||||||||||| |||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  40423092 gagtttatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 40423019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 31340842 - 31340902
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||||||  ||||||||| |||||||||||| ||||||| |||||||| ||||    
T  31340842 ttcttcaaattcaatttatgttgttataatattcttaaaataaaaaatatattaattataa 31340902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 46669959 - 46669891
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||| ||||| |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  46669959 tatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 46669891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 47669829 - 47669945
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||| ||| |||||||||   ||||||||||||||||| |   | || ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||    
T  47669829 aactcaaaaattgtattgggggagagttttggagggttatggagggtttatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaa 47669928  T
Q  216 aaacatattaatcataa 232  Q
    ||  |||||||||||||    
T  47669929 aagtatattaatcataa 47669945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 52430589 - 52430521
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||| ||||||||| |||||| ||||| | ||||| |||||||||||||    
T  52430589 tatatgaattcttcaaatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataa 52430521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 51431017 - 51431079
Alignment:
Q  170 atttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| |||||||||||||  |||||||| |||||||||||| | ||||| |||||||||||||    
T  51431017 attttttcaaattcaatatttgttgttataatattcttaaaattaaaaatatattaatcataa 51431079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 30307436 - 30307509
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| ||||||||||| |||| ||| ||||  |||||||||||| | ||||| ||||||||||||| ||||    
T  30307436 tatatgaattcttcaaatttaatatatgctgttgtaatattcttaaaattaaaaatatattaatcataagcatt 30307509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 45022554 - 45022447
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaata---ttcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaat 260  Q
    ||||||| ||||||||||||| |  |||||||||  |||   |||||||| | |||||||| || ||||||| |||| |||| ||||||| || ||||||    
T  45022554 tatatgaattcttcaaattcagtctatgttgttattatagtattcttaaaattaaaaacatgttgatcataagcattcatttatagttctctaaaaaaat 45022455  T
Q  261 actctttc 268  Q
    ||||||||    
T  45022454 actctttc 45022447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 48417627 - 48417547
Alignment:
Q  161 gtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||||||| |||||||||||||||  ||||||||| |||||| ||||| ||||||  ||||| ||||||| |||| ||||    
T  48417627 gtctatatgaattcttcaaattcaatttatgttgttataatatt-ttaaaataaaaagtatattgatcataagcattaattt 48417547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 54806537 - 54806606
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattctt-aaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| ||||||||| ||| |||||| ||||||||||||||    
T  54806537 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaaagcatattaatcataa 54806606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 3127026 - 3126958
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  3127026 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 3126958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 7182205 - 7182137
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  7182205 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 7182137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 13270020 - 13270088
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  13270020 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 13270088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17873263 - 17873331
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  17873263 tatatgaatttttcaaattcaatttatgttgttataatattcttaaaattaaaagtatattaatcataa 17873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 32060713 - 32060781
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  32060713 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 32060781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 32649018 - 32648950
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || |||||||| |||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  32649018 tatatgaatttttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 32648950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 37756737 - 37756669
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  37756737 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 37756669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 41363826 - 41363758
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  41363826 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 41363758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 47063757 - 47063817
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||| |||| |||||||||  ||||||||||| | ||||| |||||||||||||    
T  47063757 ttcttcaaatttaatatatgttgttattatattcttaaaattaaaaatatattaatcataa 47063817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 49404637 - 49404569
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  49404637 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 49404569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 13984988 - 13984909
Alignment:
Q  164 tatatgatttcttcaaattcaatac-atgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| |||||| |||| ||||  ||||||||| |||||| ||||| ||||||| ||||||||||||| |||| ||||    
T  13984988 tatatgagttcttctaatttaatattatgttgttataatatttttaaaataaaaaagatattaatcataagcattaattt 13984909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 8828224 - 8828146
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||| ||||| |||   |||||||| |||||| ||||| ||||||| ||||||||||||| |||| ||||    
T  8828224 tatatgaattctttaaatttaatctttgttgttataatatttttaaattaaaaaatatattaatcataaacattaattt 8828146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 39192326 - 39192264
Alignment:
Q  87 cataatacaaaatcttaataatttagggtaactaaaatattgtattgaatgagagttttggag 149  Q
    ||||||||||  |||| ||||||| || ||||||||||||| ||||| | |||||||||||||    
T  39192326 cataatacaatgtctttataatttgggataactaaaatattatattggaagagagttttggag 39192264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 48830826 - 48830760
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  48830826 tatgaatttttcaaattcaatcaatgttgttataatattcttaaaattaaaagtatattaatcataa 48830760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 55813633 - 55813563
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||| |||| |||||||||  ||||||||||| | | ||| ||||||||||||| |||| ||||    
T  55813633 ttcttcaaatttaataaatgttgttattatattcttaaaattataaatatattaatcataagcattaattt 55813563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 8827882 - 8827761
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    ||||||||  ||||||| || ||  |||||||| |||||||  | || ||||| | ||||||||||| |||  ||||||||| |||||||||||  | ||    
T  8827882 aactaaaaagttgtattcaaggatcgttttggaaggttttagagggtttatatcaattcttcaaatttaatctatgttgttataatattcttaatattaa 8827783  T
Q  216 aaacatattaatcataatcatt 237  Q
    ||| |||| |||||||| ||||    
T  8827782 aaatatatgaatcataaacatt 8827761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 31530097 - 31530154
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  31530097 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 31530154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 42954683 - 42954748
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||||||| |||  ||||| ||| |||||||||||| | ||||| ||||||||||||| ||||    
T  42954683 ttcttcaaatttaatgtatgttattataatattcttaaaatcaaaaatatattaatcataaacatt 42954748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 16535758 - 16535826
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || |||||||| |||  ||||||||| |||||||||||| | ||||| |||||||| ||||    
T  16535758 tatatgaatttttcaaatttaatctatgttgttataatattcttaaaattaaaaagatattaattataa 16535826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 21730341 - 21730273
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||| |||| ||||  ||||||||| ||||||||| || | ||||| |||||||||||||    
T  21730341 tatatgaattctttaaatccaatctatgttgttataatattcttgaaattaaaaatatattaatcataa 21730273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 32948540 - 32948488
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaa 216  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| |||||    
T  32948540 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaataaaa 32948488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 38317242 - 38317174
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||| ||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  38317242 tatatgaatttttcaaatccaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 38317174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 38366094 - 38366162
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  |||||| || |||||| ||||| | ||||| |||||||||||||    
T  38366094 tatatgaatttttcaaattcaatctatgttgctataatatttttaaaattaaaaatatattaatcataa 38366162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 39799539 - 39799467
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgt 244  Q
    |||||||||||  ||  ||||||||| |||||| ||||| | ||||| || ||||||||||||||| ||||||    
T  39799539 ttcttcaaattacatttatgttgttataatattattaaaattaaaaatattttaatcataatcattaatttgt 39799467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 1277948 - 1278073
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||||||| ||||||||| |||||||||| ||| ||||| |  | || ||||||| ||||||||||| |||| ||||||||| ||||||||    
T  1277948 attttggggaactaaaaaattgtattggatgagagtttcggaaggtttgagagggtttatatgaattcttcaaatttaatatatgttgttataatattct 1278047  T
Q  207 taaagtaaaaaacatattaatcataa 232  Q
    |||| | ||||| |||||||||||||    
T  1278048 taaaattaaaaatatattaatcataa 1278073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 33187908 - 33187783
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||||||||| | ||||||||||| |||||| |  | || ||||||| ||||||||||  |||| || |||||| |||||||||||| | ||    
T  33187908 aactaaaaaattgtattggaggagagttttgg-gggtttgagagggtttatatgaattcttcaaatataatatatattgttataatattcttaaaattaa 33187810  T
Q  216 aaacatattaatcataatcattgattt 242  Q
    ||| ||||||||||||| |||| ||||    
T  33187809 aaatatattaatcataagcattaattt 33187783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 41002265 - 41002197
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  41002265 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 41002197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 43665183 - 43665115
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  43665183 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 43665115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 30301824 - 30301867
Alignment:
Q  26 gaacaagtggaagaaatataggacattgagatgagaagactttg 69  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  30301824 gaacaagtggaagaaatatatgacattgagatgggaagactttg 30301867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 5968067 - 5967999
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  5968067 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 5967999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 265
Target Start/End: Original strand, 38137995 - 38138099
Alignment:
Q  161 gtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaat 260  Q
    |||||||||| ||||||||||| |||  ||||||||| |||||| || || | |||||  |||||||||||| |||| |||| |  |||| || ||||||    
T  38137995 gtctatatgaattcttcaaatttaatctatgttgttataatatttttgaaattaaaaatgtattaatcataagcattaatttatcattctctaaaaaaat 38138094  T
Q  261 actct 265  Q
    |||||    
T  38138095 actct 38138099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 38991487 - 38991419
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || |||||||| |||| ||||| ||| |||||||||||| ||||||| |||||||| ||||    
T  38991487 tatatgaattattcaaatttaatatatgttattataatattcttaaaataaaaaatatattaattataa 38991419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 43188924 - 43188992
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  43188924 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 43188992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 45066790 - 45066858
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| |||||||||||||||  ||||||||| ||| |||||||| | ||||| || ||||||||||    
T  45066790 tatatgaattcttcaaattcaatctatgttgttataatgttcttaaaattaaaaatatgttaatcataa 45066858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 44487338 - 44487271
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||||| |||| ||||||||| | |||||||||||| ||||| ||||||| ||||| |||| ||||    
T  44487338 ttcaaatttaatatatgttgttatagtattcttaaagttaaaaatatattaaccataagcattaattt 44487271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 31891338 - 31891396
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaa 217  Q
    |||| ||||||| ||||||||||| |||  ||||||||| |||||||||||| ||||||    
T  31891338 gagtttatatgaattcttcaaatttaatctatgttgttataatattcttaaattaaaaa 31891396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 43348252 - 43348150
Alignment:
Q  165 atatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactc 264  Q
    |||||| ||||||||||| |||  ||||||||| |||||| ||||| | ||||| ||| ||||||||  |||| |||| | ||||| || |||| |||||    
T  43348252 atatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatataataatcatatgcattaatttattgttctctaaaaaactactc 43348153  T
Q  265 ttt 267  Q
    |||    
T  43348152 ttt 43348150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 13697373 - 13697450
Alignment:
Q  190 tgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactcttt 267  Q
    |||||||| ||||||||| |  | ||||| |||| |||||||| | ||||||| |  |||||||||||||||||||||    
T  13697373 tgttgttataatattctttatattaaaaaaatatgaatcataagcgttgatttatcattctttagaaaaatactcttt 13697450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 28437545 - 28437488
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  28437545 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 28437488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 33406635 - 33406578
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  33406635 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 33406578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 33810215 - 33810158
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||| ||| ||||||||| |||||||||||| | ||||  |||||||||||||    
T  33810215 ttcaaattctatatatgttgttataatattcttaaaattaaaagtatattaatcataa 33810158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 42267044 - 42266943
Alignment:
Q  141 gttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgat 240  Q
    |||||||| |||||| | | || ||||||| | ||||||||| |||  ||||||||| |||||||||||| | ||||| ||| ||| ||||| |||| ||    
T  42267044 gttttggaaggttttttagggtttatatgaatgcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatagtaaacataagcattaat 42266945  T
Q  241 tt 242  Q
    ||    
T  42266944 tt 42266943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 3658525 - 3658457
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| || ||||||||||| |||   |||||||||||||    
T  3658525 tatatgaatttttcaaattcaatctatgttgttataacattcttaaagtcaaaggtatattaatcataa 3658457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 12624388 - 12624320
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||| || |||||| |||||||||||| | ||||| || |||| |||||    
T  12624388 tatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatatgttaaccataa 12624320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 23620807 - 23620740
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| |  |||| |||||||||||||    
T  23620807 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaat-taaaatatattaatcataa 23620740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 24923374 - 24923330
Alignment:
Q  198 aaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||||| | ||||| |||||||||||||||||| ||||    
T  24923374 aaatattcttaaaattaaaaatatattaatcataatcattaattt 24923330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 34399062 - 34399018
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaa 210  Q
    ||||| ||||||||||||||| || ||||||| ||||||||||||    
T  34399062 tatgaattcttcaaattcaatccacgttgttataatattcttaaa 34399018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 42620366 - 42620298
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  || |||||| |||||||||||| | ||||  |||||||||||||    
T  42620366 tatatgaatttttcaaattcaatctatattgttataatattcttaaaattaaaagtatattaatcataa 42620298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 267
Target Start/End: Complemental strand, 22817411 - 22817252
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||||||| ||||||||||| ||| ||||| | |||||| |  | || ||||||  || |||||||| |||||||||| ||| ||||||||    
T  22817411 attttggggaactaaaa-attgtattgaaagagggtttttgggggtttaagagtgtttatatgtatttttcaaatttaatacatgttattataatattct 22817313  T
Q  207 taaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactcttt 267  Q
    |||| | ||||| ||||||||||||| |||| |||| |  ||||||| |||||||||||||    
T  22817312 taaaattaaaaatatattaatcataagcattcatttatcattctttataaaaatactcttt 22817252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 33212387 - 33212455
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||| | ||||| |||| ||||||||    
T  33212387 tatatgaattcttcaaatttaatacatgttgttataatattcttaaaattaaaaatatatgaatcataa 33212455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 2502380 - 2502302
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| || |||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  2502380 tatatgaattcttcaaatttaatatatattgttataatattcttaaaattaaaaatatattaatcataagcattaattt 2502302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 20381880 - 20381802
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| |||||||| || |||| ||||||||| |||||||||||| | ||||| |||| ||||||||||||| ||||    
T  20381880 tatatgaattcttcaattttaatatatgttgttataatattcttaaaattaaaaatatatcaatcataatcattaattt 20381802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 13120433 - 13120332
Alignment:
Q  167 atgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactctt 266  Q
    |||| |||||||||||||||  ||||||||| |||||| ||||| | ||||| |||||||| ||| ||||| |||| |  |||| || |||| |||||||    
T  13120433 atgaattcttcaaattcaatctatgttgttataatattgttaaaattaaaaatatattaattatactcattaatttatcattctctaaaaaattactctt 13120334  T
Q  267 tc 268  Q
    ||    
T  13120333 tc 13120332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 23095147 - 23095074
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  23095147 gagtttatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 23095074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 597147 - 597046
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||||||||| |||||||||   |||||||| |||||| ||||| ||||||| | | ||||||||| |||| |||| | ||||| || ||| |||||    
T  597147 tatatgatttcttgaaattcaat--ttgttgttataatatttttaaaataaaaaatacagtaatcataaacattaatttatcgttctctacaaagatact 597050  T
Q  264 cttt 267  Q
    ||||    
T  597049 cttt 597046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 24734947 - 24735015
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  24734947 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 24735015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 26574409 - 26574341
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  26574409 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 26574341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 34914694 - 34914762
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  34914694 tatatgaatttttcaaattcaatttatgttgttataatattcttaaaattaaaagtatattaatcataa 34914762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 8439409 - 8439331
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||| ||||||||||||| |||  ||||| ||| |||||| ||||| | ||||| ||||||||||||| |||| ||||    
T  8439409 tatattatttcttcaaatttaatctatgtttttataatattgttaaaattaaaaatatattaatcataaacattaattt 8439331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 27793596 - 27793554
Alignment:
Q  189 atgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    |||||||||||||||||||||| | ||||| ||||||||||||    
T  27793596 atgttgttaaaatattcttaaaattaaaaatatattaatcata 27793554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 1029360 - 1029425
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatca 229  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  ||||||||||    
T  1029360 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatca 1029425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 4464992 - 4465089
Alignment:
Q  164 tatatgatttcttcaaattc-aatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaat 260  Q
    ||||||| ||||| |||||  ||| |||||||||| |||||| ||||| | ||||| ||||||||||||| |||| |||| |  ||||||| ||||||    
T  4464992 tatatgaattctttaaattttaatgcatgttgttataatatttttaaaattaaaaatatattaatcataaacattaatttatcattctttaaaaaaat 4465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 5825399 - 5825467
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || || |||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  5825399 tatatgaatttttgaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 5825467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 26481145 - 26481077
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  | ||||||| |||||||||||| | ||||  |||||||||||||    
T  26481145 tatatgaatttttcaaattcaatctacgttgttataatattcttaaaattaaaagtatattaatcataa 26481077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 33677116 - 33677168
Alignment:
Q  190 tgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  33677116 tgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 33677168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 267
Target Start/End: Original strand, 36269753 - 36269912
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||||||| ||||||||| | |||||||| || |||||||   |  | ||||||| |||||||||||||||  |||||| || ||||||||    
T  36269753 atttgggggaactaaaaaattgtattggaggagagtttcggggggttttggaggatttatatgaattcttcaaattcaatctatgttgctataatattct 36269852  T
Q  207 taaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactcttt 267  Q
    |||| |||||||||||| |||||||| |||| |||| |  |||| || |||||||||||||    
T  36269853 taaaataaaaaacatatcaatcataagcattaatttatcattctcta-aaaaatactcttt 36269912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 36325782 - 36325886
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||| | ||||  ||||||||||||| || | |||  | ||||| |||||||| |||    
T  36325782 tatatgaattcttcaaattcaatctatgttgttaaaatattattaaaattaaaattatattaatcataaacaattattcattgttctctagaaaaacact 36325881  T
Q  264 ctttc 268  Q
    |||||    
T  36325882 ctttc 36325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 34552094 - 34552004
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatac 262  Q
    ||||| ||||| |||  ||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||| |   ||| |||||||||||    
T  34552094 ttctttaaatttaatctatgttgttataatattcttaaaataaaaaatatattaatcataagcattgatttatcactctctagaaaaatac 34552004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17688406 - 17688474
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||| ||||||||| |||||||||||| | ||||  |||||||||||||    
T  17688406 tatatgaatttttcaaattcaatatatgttgttataatattcttaaaattaaaagtatattaatcataa 17688474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 35619526 - 35619450
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||  ||||||||||||| |||| ||||    
T  35619526 tatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaagtatattaatcataaacattaattt 35619450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 43036337 - 43036269
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  43036337 tatatgaattcttcaaatttaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 43036269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 32287599 - 32287714
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||||||||| ||||| ||||||  |||||||   |||| ||||| ||||||||||||| |||| |||||| || |||||| |||||   ||    
T  32287599 aactaaaaaattgtattggatgagggttttgaggggttttggagagtttatatcatttcttcaaatttaatatatgttgatataatatttttaaaactaa 32287698  T
Q  216 aaacatattaatcata 231  Q
    ||| ||| ||||||||    
T  32287699 aaatatagtaatcata 32287714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 25561337 - 25561259
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    |||| ||||||| ||||||||||| |||| ||||| ||| | |||||||||| | ||||| ||||||||||||| ||||    
T  25561337 gagtttatatgaattcttcaaatttaatatatgttattatattattcttaaaattaaaaatatattaatcataagcatt 25561259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 43530304 - 43530234
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||| |||| ||||||||| |||| ||||||| | ||||| ||||||||||||| |||| ||||    
T  43530304 ttcttcaaatttaatatatgttgttataatactcttaaaattaaaaatatattaatcataagcattaattt 43530234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 43571979 - 43571910
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataat 233  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  ||||||||||||||    
T  43571979 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataat 43571910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 7964041 - 7964109
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  7964041 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 7964109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 13255411 - 13255479
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  13255411 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaatcaaaagtatattaatcataa 13255479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 23871477 - 23871409
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  23871477 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 23871409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 27500051 - 27500119
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  27500051 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 27500119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 32299169 - 32299237
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  32299169 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 32299237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 42488641 - 42488573
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  42488641 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaatcaaaagtatattaatcataa 42488573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 44545214 - 44545166
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatat 223  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||| ||||    
T  44545214 ttcaaattcaatatatgttgttataatattcttaaaataaaaaatatat 44545166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 47206438 - 47206370
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  47206438 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 47206370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 49102986 - 49102918
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||| |||||| || |||||||||||| | ||||| ||||| |||||||    
T  49102986 tatatgaattcttcaaatttaatatatgttgctataatattcttaaaattaaaaatatattcatcataa 49102918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 6538025 - 6538088
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaat 227  Q
    |||||||  |||||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||    
T  6538025 tatatgaactcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaat 6538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 261868 - 261922
Alignment:
Q  178 aaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||| |||||||||| || ||||||||| | ||||| |||||||||||||    
T  261868 aaattcaatccatgttgttataaaattcttaaaattaaaaatatattaatcataa 261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 1523668 - 1523730
Alignment:
Q  170 atttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  1523668 attttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 1523730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 2175403 - 2175469
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  2175403 tatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 2175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 12293885 - 12293947
Alignment:
Q  170 atttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||||||| ||||||||| |||||||||||| | ||||  |||||||| ||||    
T  12293885 attttttcaaattcaatatatgttgttataatattcttaaaattaaaagtatattaataataa 12293947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 13061409 - 13061343
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  13061409 tatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 13061343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 42806239 - 42806305
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||| ||||||||||| |||  ||||||||| |||||| ||||| ||||||| |||| ||||||||    
T  42806239 tatgaattcttcaaatttaatctatgttgttataatatttttaaaataaaaaatatatcaatcataa 42806305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 47905703 - 47905637
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcat 230  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||    
T  47905703 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcat 47905637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 52331116 - 52331194
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| || |||||  ||||| |||||||||||||| ||| | ||||||| |||| ||||    
T  52331116 tatatgacttcttcaaatttaatatattttgtttgaatatacttaaagtaaaaaatataatgatcataaacattaattt 52331194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 14153189 - 14153246
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  14153189 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 14153246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 34918728 - 34918683
Alignment:
Q  192 ttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    |||||| |||||||||||| ||||||| ||||||||||||| ||||    
T  34918728 ttgttataatattcttaaaataaaaaatatattaatcataagcatt 34918683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 36668663 - 36668590
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| || || |||||||||  || |||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  36668663 tatatgaattttttaaattcaatctatattgttataatattcttaaaattaaaaatatattaatcataagcatt 36668590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 39889749 - 39889604
Alignment:
Q  87 cataatacaaaatcttaataatttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaat 186  Q
    ||||||| |||||||   |||||| ||| |||| ||| |||||||||   ||| ||||||| ||||| |   | || ||||||| || ||||||||||||    
T  39889749 cataataaaaaatctccctaatttgggggaactcaaaaattgtattgggggagggttttggggggttatggagggtttatatgaatttttcaaattcaat 39889650  T
Q  187 acatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
      ||||||||| ||||||| |||| | ||||  |||||||||||||    
T  39889649 ctatgttgttataatattcataaaattaaaagtatattaatcataa 39889604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 41432773 - 41432708
Alignment:
Q  167 atgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||||| |||  |||| |||| |||||||||||| | ||||| |||||||||||||    
T  41432773 atgaattcttcaaatttaatctatgtagttataatattcttaaaattaaaaatatattaatcataa 41432708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 896509 - 896441
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||| ||||    
T  896509 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaattataa 896441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 2925949 - 2925881
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || |||||||| |||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  2925949 tatatgaatttttcaaatttaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 2925881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 6015498 - 6015566
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||| |||| ||||||||| | ||||| |||| | ||| | |||||||||||||    
T  6015498 tatatgaattcttcaaatttaatatatgttgttatagtattcgtaaaattaaatatatattaatcataa 6015566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17675263 - 17675331
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  |||| |||| |||||||||||| | ||||  |||||||||||||    
T  17675263 tatatgaatttttcaaattcaatctatgtggttataatattcttaaaattaaaagtatattaatcataa 17675331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 20712222 - 20712162
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||||||  ||||||||| |||||| ||||| | ||||| ||| |||||||||    
T  20712222 ttcttcaaattcaatctatgttgttataatatttttaaaattaaaaatatactaatcataa 20712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 23799885 - 23799913
Alignment:
Q  125 attgtattgaatgagagttttggagggtt 153  Q
    |||||||||||||||||||||||||||||    
T  23799885 attgtattgaatgagagttttggagggtt 23799913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 42162067 - 42161999
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||||||    
T  42162067 tatatgaatttttcaaattcaatctatgttgttataatatttttaaaattaaaagtatattaatcataa 42161999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 50162210 - 50162270
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||| |||  |||| |||| |||||||||||| | ||||| |||||||||||||    
T  50162210 ttcttcaaattgaatctatgtagttataatattcttaaaattaaaaatatattaatcataa 50162270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 50402808 - 50402876
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||| ||||  ||||||||| |||||| ||||| | ||||| |||||||||||||    
T  50402808 tatatgaatttttcaaatccaatctatgttgttataatatttttaaaattaaaaatatattaatcataa 50402876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 52620848 - 52620771
Alignment:
Q  165 atatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||| ||||||||||| |||| ||||||||| |||||| ||||| ||||||| ||||||||||||| |||||||||    
T  52620848 atatgaattcttcaaatttaatatatgttgttataatatttttaaaataaaaaatatattaatcataagcattgattt 52620771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 7302103 - 7302229
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||| ||| ||||||||||| ||| ||||||||| ||||||  |||| || |||| ||||||||||| |||  || | |||| ||||||||||||   ||    
T  7302103 aactcaaaaattgtattgaaagagggttttggagcgttttaaagagtttacatgaattcttcaaatttaatctatatagttataatattcttaaaactaa 7302202  T
Q  216 aaacatattaatcataatcattgattt 242  Q
    ||| |||||||||||||  ||||||||    
T  7302203 aaatatattaatcataagtattgattt 7302229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 267
Target Start/End: Original strand, 4247134 - 4247287
Alignment:
Q  114 gtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagta 213  Q
    |||||||||| |||||||||   ||||||||||  ||||||||   ||| || |||| ||||||||||| |||  || | |||| |||||||||||| |     
T  4247134 gtaactaaaaaattgtattgtgggagagttttgaggggttttagatagtttacatgaattcttcaaatttaatctatttagttataatattcttaaaatt 4247233  T
Q  214 aaaaacatattaatcataatcattgatttgtagttctttagaaaaatactcttt 267  Q
    ||||| ||||||||||||| |||| |||| |  |||| || |||| ||||||||    
T  4247234 aaaaatatattaatcataagcattaatttatcattctctaaaaaattactcttt 4247287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 40674127 - 40674252
Alignment:
Q  117 actaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaa 216  Q
    |||||||  |||||||| | ||||||||||| | ||||    |||| ||||||| ||||| ||||| |||| ||||||||| |||||||||||| | |||    
T  40674127 actaaaaagttgtattggacgagagttttggggagtttgggagagtttatatgaattctttaaatttaatatatgttgttataatattcttaaaattaaa 40674226  T
Q  217 aacatattaatcataatcattgattt 242  Q
    || |||||||||| ||  ||||||||    
T  40674227 aatatattaatcacaagtattgattt 40674252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 46891405 - 46891521
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttt-tatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaa 214  Q
    |||||||| ||||||||  | ||||||||||| |||||| |  ||| | ||||| | ||||||||||| |||| ||||||||| |||||||||||| | |    
T  46891405 aactaaaaaattgtattagaggagagttttggggggtttgtgaggatt-tatataaattcttcaaatttaatatatgttgttataatattcttaaaatta 46891503  T
Q  215 aaaacatattaatcataa 232  Q
    |||| |||||||||||||    
T  46891504 aaaatatattaatcataa 46891521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 53888506 - 53888627
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||||||||| | ||| ||||||| ||||||    | || ||||||| ||||||||||| |||| ||||||| | |||||||||||| | ||    
T  53888506 aactaaaaaattgtattggaggagggttttggggggtttgggagggtttatatgaattcttcaaatttaatatatgttgtaataatattcttaaaattaa 53888605  T
Q  216 aaacatattaatcataatcatt 237  Q
    ||| ||||||| ||||| ||||    
T  53888606 aaatatattaaccataagcatt 53888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 54126330 - 54126431
Alignment:
Q  167 atgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactctt 266  Q
    |||| ||||||||||| |||  ||||||||| |||||| ||||| ||||||| |||||| ||||||||||| |||| |  ||||||| ||||| | ||||    
T  54126330 atgaattcttcaaatttaatcgatgttgttataatattgttaaaataaaaaatatattattcataatcattaatttatcattctttaaaaaaacattctt 54126429  T
Q  267 tc 268  Q
    ||    
T  54126430 tc 54126431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 38526220 - 38526288
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||| ||||||||| |||||||||||| | ||||  |||||||||||||    
T  38526220 tatatgaatttttcaaattcaatatatgttgttataatattcttaaaattaaaagtatattaatcataa 38526288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 3457607 - 3457536
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattctt-aaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||| |||||||||||||| |||||| || ||| ||||||| ||||||||||||| |||| ||||    
T  3457607 ttcttcaaattaaatacatgttgttataatatttttaaaattaaaaaaaatattaatcataaacattaattt 3457536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 7661076 - 7661171
Alignment:
Q  137 gagagttttggagggttttatggag--tctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||||||||  ||||||  | ||||||| || ||||||||||||| ||||||||| |||||||||||| | ||||  || ||||||||||    
T  7661076 gagagttttggagggtt--atggaggatttatatgaatttttcaaattcaatatatgttgttataatattcttaaaattaaaagtatgttaatcataa 7661171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 36637867 - 36637933
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    ||||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||||||    
T  36637867 tatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaa-atattaatcata 36637933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 19148234 - 19148312
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| | ||||||||| |||  ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  19148234 tatatgaatgcttcaaatttaatttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 19148312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 48444572 - 48444650
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||| ||||||| |||| || |||||| |||||| ||||| | ||||| ||||||||||||| |||||||||    
T  48444572 tatatgaattcctcaaatttaatatatattgttataatatttttaaaattaaaaatatattaatcataaacattgattt 48444650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 17642667 - 17642724
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||| |||||||||| |||||||||||| | ||||  |||||||||||||    
T  17642667 ttcaaattcaatccatgttgttataatattcttaaaattaaaagtatattaatcataa 17642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 39114978 - 39114905
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| |||||||||||||||  ||||| ||| |||||||||||| | ||||  ||||||||||||| ||||    
T  39114978 tatatgaattcttcaaattcaatctatgttattataatattcttaaaattaaaattatattaatcataaacatt 39114905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 54372611 - 54372522
Alignment:
Q  143 tttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||||  | || ||||||| ||||||||||||| |  ||||||||| ||||||| |||| | ||||| |||||||| ||||    
T  54372611 tttggagggttttagagggtttatatgaattcttcaaattcagtctatgttgttataatattcctaaaattaaaaatatattaattataa 54372522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 2420726 - 2420794
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  2420726 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 2420794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 10757574 - 10757510
Alignment:
Q  167 atgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    |||| ||||||||||||| || ||||||||| |||||||||||| | || || ||||||||||||    
T  10757574 atgaattcttcaaattcagtatatgttgttacaatattcttaaaattaataatatattaatcata 10757510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 35283154 - 35283222
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||| ||| |||| ||||||||| |||||||||||| | ||||| |||||| ||||||    
T  35283154 tatatgaattcttcatatttaatatatgttgttataatattcttaaaattaaaaatatattagtcataa 35283222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 38593019 - 38593087
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||| ||||||||| |||| | ||||| | |||| ||||||||||||||    
T  38593019 tatatgaatttttcaaattcaatatatgttgttataatacttttaaaattaaaagcatattaatcataa 38593087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 39499265 - 39499333
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  39499265 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 39499333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 41961991 - 41961923
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  41961991 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 41961923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 43007536 - 43007468
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  43007536 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 43007468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 47714687 - 47714619
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  47714687 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 47714619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 47789460 - 47789392
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  47789460 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 47789392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 55439651 - 55439719
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||| ||| ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  55439651 tatatgtttttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 55439719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 11500176 - 11500247
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattctt-aaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||| |||| ||||||||| ||||||||| ||| ||||||| |||||||| |||| |||| ||||    
T  11500176 ttcttcaaatttaatatatgttgttataatattcttaaaattaaaaaatatattaattataaacattaattt 11500247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 21494867 - 21494804
Alignment:
Q  179 aattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||| |||| ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  21494867 aatttaatatatgttgttataatattcttaaaatgaaaaatatattaatcataagcattaattt 21494804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 49304275 - 49304370
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaa 259  Q
    ||||||| ||||||||||||||   ||||| ||| ||||||| |||| | ||||| ||||||||||||| |||| |||| |  ||||||| |||||    
T  49304275 tatatgaattcttcaaattcaacctatgttattataatattcataaaattaaaaatatattaatcataaacattaatttatcattctttaaaaaaa 49304370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Original strand, 2927931 - 2927984
Alignment:
Q  184 aatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    |||| ||||||||| |||||||||||| | ||||| ||||||||||||| ||||    
T  2927931 aatatatgttgttataatattcttaaaattaaaaatatattaatcataaacatt 2927984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 3537218 - 3537340
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||||||| ||||||||| | ||||||||||| || |||||  |||  ||||||| ||||||||||| |||  |||||  || |||||| |    
T  3537218 atttgggggaactaaaaaattgtattggaggagagttttgggggttttta--gagggtatatgaattcttcaaatttaatctatgttaatataatatttt 3537315  T
Q  207 taaagtaaaaaacatattaatcata 231  Q
    |||| | ||||| ||| ||||||||    
T  3537316 taaaattaaaaatatagtaatcata 3537340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 25428746 - 25428803
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  25428746 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 25428803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 29623303 - 29623376
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| ||||||||||| |||| ||||||||| |||||| ||||  | ||||| |||| |||||||| ||||    
T  29623303 tatatgaattcttcaaatttaatatatgttgttataatatttttaatattaaaaatatatgaatcataagcatt 29623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 30121541 - 30121468
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||| || ||||||||||||  ||||||| | |||||||||||| | ||||  |||||||||||||    
T  30121541 gagtttatatgaatttttcaaattcaatctatgttgtaataatattcttaaaattaaaagtatattaatcataa 30121468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 30131900 - 30131832
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  || |||||| |||||||||||| | ||||  |||||||||||||    
T  30131900 tatatgaatttttcaaattcaatctatcttgttataatattcttaaaattaaaagtatattaatcataa 30131832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 31178261 - 31178193
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  |||||| || |||||||||||| | ||||  |||||||||||||    
T  31178261 tatatgaatttttcaaattcaatctatgttgctataatattcttaaaattaaaagtatattaatcataa 31178193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 32721095 - 32720992
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| || |||||||| |||| ||||||| | |||||| ||||| | ||||| ||||||||||||| |||| |||| |   ||| || |||||||||    
T  32721095 tatatgaatttttcaaatttaatatatgttgtaataatatt-ttaaaattaaaaatatattaatcataagcattaatttatcactctctacaaaaatact 32720997  T
Q  264 ctttc 268  Q
    |||||    
T  32720996 ctttc 32720992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 42583312 - 42583245
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  |||| |||| |||||||||||||| ||||  |||||||||||||    
T  42583312 tatatgaatttttcaaattcaatctatgt-gttataatattcttaaagttaaaagtatattaatcataa 42583245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 46017272 - 46017340
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||||||    
T  46017272 tatatgaatttttcaaattcaatctatgttgttataatatttttaaaattaaaagtatattaatcataa 46017340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 49860915 - 49860971
Alignment:
Q  176 tcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  49860915 tcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 49860971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 4841743 - 4841620
Alignment:
Q  144 ttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttg 243  Q
    ||||||||||| |  | || ||||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||     
T  4841743 ttggagggtttgagagggtttatatgaattcttcaaattgaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaattta 4841644  T
Q  244 tagttctttagaaaaatactcttt 267  Q
    |   ||| || |||||||||||||    
T  4841643 tcactctataaaaaaatactcttt 4841620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 3081393 - 3081278
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||| ||||| ||||||||||||| |||||| |  | || ||||||| ||||| ||||| |||| ||||| ||| |||||||||||| | ||    
T  3081393 aactaaaaaattatattggatgagagttttgg-gggtttgagagggtttatatgaattctttaaatttaatatatgttcttataatattcttaaaattaa 3081295  T
Q  216 aaacatattaatcataa 232  Q
    ||| |||||||||||||    
T  3081294 aaatatattaatcataa 3081278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 1935113 - 1935043
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  1935113 ttcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 1935043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 43496895 - 43496822
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| ||||||||||| |||  ||||||||| |||||| ||||| ||||||| ||| ||||||||||||||    
T  43496895 tatatgaattcttcaaatttaatttatgttgttataatatttttaaaataaaaaatatagtaatcataatcatt 43496822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 26018819 - 26018886
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  26018819 ttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 26018886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 6491251 - 6491329
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| ||   ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  6491251 tatatgaattcttcaaatttaacttatgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 6491329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 28154782 - 28154835
Alignment:
Q  189 atgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||| |||| ||||    
T  28154782 atgttgttataatattcttaaaataaaaaatatattaatcataaacattaattt 28154835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 17092964 - 17093032
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  17092964 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 17093032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 10295550 - 10295617
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  ||||||||||||    
T  10295550 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcata 10295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 27480186 - 27480119
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  ||||||||||||    
T  27480186 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcata 27480119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 29799699 - 29799782
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||| ||||| | ||||||||||| |||| ||||| ||| |||||| ||||| | ||||| ||||||||||||| |||| ||||    
T  29799699 gagtttatataaattcttcaaatttaatatatgttattataatatttttaaaattaaaaatatattaatcataagcattaattt 29799782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 35708776 - 35708709
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcata 231  Q
    ||||||| ||||||||||| |||| ||||||||| | |||| ||||| | ||||| ||||||||||||    
T  35708776 tatatgaattcttcaaatttaatatatgttgttatattatttttaaaatgaaaaatatattaatcata 35708709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 33718254 - 33718316
Alignment:
Q  170 atttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||||||  | ||||||| |||||||||||| | ||||| |||||||||||||    
T  33718254 attttttcaaattcaatctacgttgttataatattcttaaaattaaaaatatattaatcataa 33718316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 29709606 - 29709655
Alignment:
Q  193 tgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||| |||||||||||| ||||||| ||||||||||||| |||| ||||    
T  29709606 tgttataatattcttaaaataaaaaatatattaatcataaacattaattt 29709655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 35705035 - 35704982
Alignment:
Q  189 atgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  35705035 atgttgttataatattcttaaaattaaaaatatattaatcataagcattaattt 35704982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 2021047 - 2021115
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || || |||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  2021047 tatatgaattttttaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 2021115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 26149670 - 26149738
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||| ||||||||    
T  26149670 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatatcaatcataa 26149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 38302372 - 38302304
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||| ||| |||||||||||| | ||||  |||||||||||||    
T  38302372 tatatgaatttttcaaattcaatctatgttattataatattcttaaaattaaaagtatattaatcataa 38302304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 42946786 - 42946660
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||| ||||| || ||||||||| |||||||    |||| ||||| | ||||||||||| |||| ||||||||| | |||||||||| | ||    
T  42946786 aactaaaaaattatattggatcagagttttgaagggtttgtgagagtttatataaattcttcaaatttaatatatgttgttatactattcttaaaattaa 42946687  T
Q  216 aaacatattaatcataatcattgattt 242  Q
    ||| ||||||||||||| |||| ||||    
T  42946686 aaatatattaatcataaacattaattt 42946660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 11522194 - 11522116
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||| ||||||||| ||| |||| ||||    
T  11522194 tatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcttaaacattaattt 11522116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 16465173 - 16465095
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| || | ||||||||||||||||| ||||||| ||| ||||||||| |||| ||||    
T  16465173 tatatgaattcttcaaatttaatatatatagttaaaatattcttaaaataaaaaatatagtaatcataaacattaattt 16465095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 14008343 - 14008275
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||| ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  14008343 tatatgattttttcaaattcaatctatgttgttataatattcttaaaatcaaaagtatattaatcataa 14008275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 36030860 - 36030964
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| ||||||||||||| |  ||||| ||  |||||||||||| | ||||| ||||||||||||| |||| |||| |  |||| || |||||||||    
T  36030860 tatatgaattcttcaaattcagtctatgtttttgtaatattcttaaaattaaaaatatattaatcataagcattaatttatcattctctaaaaaaatact 36030959  T
Q  264 ctttc 268  Q
    |||||    
T  36030960 ctttc 36030964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 9087484 - 9087401
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||| ||||||| ||||||||||| |||| ||||||| | |||||| ||||| | ||||| ||||||||||||| |||| ||||    
T  9087484 gagtttatatgaattcttcaaatttaatatatgttgtcataatattattaaaattaaaaatatattaatcataagcattaattt 9087401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 44656787 - 44656696
Alignment:
Q  141 gttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||||||||||||| |  | || ||| ||| || |||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  44656787 gttttggagggtttgagagggtttatgtgaattgttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 44656696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 12941869 - 12941743
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatg-ttgttaaaatattc 205  Q
    |||| ||| ||||| || ||| ||||| | ||||||||||||| |||| |  |||| ||||||| ||||||||||| |||| ||| |||||| ||||||     
T  12941869 atttgggggaactagaaaattatattggaggagagttttggagagtttgaaagagtttatatgaattcttcaaatttaatatatgtttgttataatattt 12941770  T
Q  206 ttaaagtaaaaaacatattaatcataa 232  Q
    ||||| | ||||| ||||||| |||||    
T  12941769 ttaaaattaaaaatatattaaccataa 12941743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 31584828 - 31584703
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||| ||||||| |||  |||||| |||||| |  | || |||||||  |||||||||| |||| ||||||||| |||||||||||| | ||    
T  31584828 aactaaaaaattatattgaaggaggattttggggggtttgagagggtttatatgaagtcttcaaatttaatatatgttgttataatattcttaaa-tcaa 31584730  T
Q  216 aaacatattaatcataatcattgattt 242  Q
    | | ||||||||||||| |||| ||||    
T  31584729 atatatattaatcataagcattaattt 31584703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 232
Target Start/End: Complemental strand, 8555847 - 8555722
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||||||| |||||||||   ||| ||||||| ||||| ||  | || ||||||| || ||||||||||||  || |||||| ||||||||    
T  8555847 atttgggggaactaaaaaattgtattgggggagggttttggggggttatagagggtttatatgaatttttcaaattcaatctatattgttataatattct 8555748  T
Q  207 taaagtaaaaaacatattaatcataa 232  Q
    |||| | ||||  |||||||||||||    
T  8555747 taaaattaaaagtatattaatcataa 8555722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 13767485 - 13767558
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| || ||||||||||||  ||||||||| |||||| ||||| | ||||| ||||||||||||| ||||    
T  13767485 tatatgaatttttcaaattcaatctatgttgttataatatttttaaaattaaaaatatattaatcataaacatt 13767558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 41503250 - 41503299
Alignment:
Q  193 tgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||||||||||||||| | ||||| |||||||||||||||||| ||||    
T  41503250 tgttaaaatattcttaaacttaaaaatatattaatcataatcattaattt 41503299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 3119866 - 3119798
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  3119866 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 3119798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 4042031 - 4042099
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  4042031 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 4042099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 8410944 - 8410876
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  8410944 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 8410876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 13765953 - 13765885
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  13765953 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 13765885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 16625818 - 16625715
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| ||||||||||| |||  ||||||||| |||||||||||  | ||||| |||| |||||||| ||||| ||| |  |||| || |||||||||    
T  16625818 tatatgaattcttcaaatttaatctatgttgttataatattcttaatattaaaaatatatgaatcataagcattggtttatcattctcta-aaaaatact 16625720  T
Q  264 ctttc 268  Q
    |||||    
T  16625719 ctttc 16625715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 18826240 - 18826172
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  18826240 tatatgaatttttcaaattcaatttatgttgttataatattcttaaaattaaaagtatattaatcataa 18826172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 36567292 - 36567224
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  36567292 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 36567224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 13767269 - 13767347
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||  || |||||| |||||||||||||  ||||| ||||||| ||||| |||| ||||    
T  13767269 tatatgaattcttcaaattaaatttatattgttacaatattcttaaagctaaaaatatattaaccataaacattaattt 13767347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 44954034 - 44953968
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcat 230  Q
    ||||||| ||||| ||||| |||| ||||| ||| |||||||||||| | ||||| |||||||||||    
T  44954034 tatatgagttctttaaatttaatatatgttattataatattcttaaaattaaaaatatattaatcat 44953968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 3038950 - 3038893
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  3038950 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 3038893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 4666203 - 4666280
Alignment:
Q  165 atatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||| || |||||||| |||| || |||||| |||||||||||| |  |||| ||||||||||||| |||| ||||    
T  4666203 atatgaatttttcaaatttaatatatcttgttataatattcttaaaatttaaaatatattaatcataagcattaattt 4666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 8990966 - 8990909
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  8990966 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 8990909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 44020417 - 44020474
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  44020417 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 44020474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 9087717 - 9087613
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaa 258  Q
    |||| ||||||| || |||||||| |||| || |||| | |||||| ||||| | ||||| ||||||||||||| |||| |||| |   |||||| ||||    
T  9087717 gagtttatatgaattattcaaatttaatatatattgtcataatattattaaaattaaaaatatattaatcataaacattaatttatcactctttaaaaaa 9087618  T
Q  259 atact 263  Q
    |||||    
T  9087617 atact 9087613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 18780451 - 18780519
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||| ||||| | ||||  |||||||||||||    
T  18780451 tatatgaatttttcaaattcaatctatgttgttataatattattaaaattaaaagtatattaatcataa 18780519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 31899370 - 31899302
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  || |||||| |||||||||||| | ||||  |||||||||||||    
T  31899370 tatatgaatttttcaaattcaatctatattgttataatattcttaaaattaaaagtatattaatcataa 31899302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 38293955 - 38294023
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || | ||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  38293955 tatatgaattttccaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 38294023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 40357524 - 40357592
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||| ||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  40357524 tatatgaatttttcaaatccaatctatgttgttataatattcttaaaattaaaattatattaatcataa 40357592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 44137202 - 44137270
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||| ||| |||||||||||| | ||||  |||||||||||||    
T  44137202 tatatgaatttttcaaattcaatctatgttcttataatattcttaaaattaaaagtatattaatcataa 44137270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 8948692 - 8948765
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| ||||||||||| |||| ||||||||| ||||||| |||| | ||||||||||||||||||| ||||    
T  8948692 tatatgacttcttcaaatttaatatatgttgttataatattcataaaattaaaaacatattaatcataaacatt 8948765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 41455321 - 41455394
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||| ||||||||||| |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  41455321 gagtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatatattaatcataa 41455394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 13406498 - 13406572
Alignment:
Q  168 tgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    |||||| ||| ||||||||| ||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||    
T  13406498 tgattttttcgaattcaatatatgttgttataatattcttaaaatcaaaaatatattaatcataagcattaattt 13406572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 16024592 - 16024519
Alignment:
Q  159 gagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||| || || ||||| |||| ||||||||| |||||||||||| ||||||| |||||||||||||    
T  16024592 gagtgtatatgaattttttaaatttaatatatgttgttataatattcttaaattaaaaaatatattaatcataa 16024519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 16424205 - 16424309
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| ||||||||||| |||| |||| |||| |||||||||||| | ||||| |||||||| |||| || | |||| | | |||||| ||| |||||    
T  16424205 tatatgaattcttcaaatttaatatatgtagttataatattcttaaaattaaaaatatattaattataagcagtaatttattgctctttaaaaagatact 16424304  T
Q  264 ctttc 268  Q
    |||||    
T  16424305 ctttc 16424309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 34349782 - 34349850
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||| ||||||||| |||||||||||| | ||||  |||||||||||||    
T  34349782 tatatgaatttttcaaattcaatatatgttgttataatattcttaaaattaaaagtatattaatcataa 34349850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 27085415 - 27085493
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||||| ||||||||||| |||| ||||||||| |||||| || || | ||||| ||||||||||||| |||| ||||    
T  27085415 tatatgaattcttcaaatttaatatatgttgttataatattttttaaattaaaaatatattaatcataagcattaattt 27085493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 10878796 - 10878727
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataat 233  Q
    ||||||| ||||||| ||| |||| ||||||||| |||||| ||||| | ||||| ||||||||||||||    
T  10878796 tatatgagttcttcacatttaatatatgttgttataatatttttaaaattaaaaatatattaatcataat 10878727  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 32220 - 32288
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||||  |||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  32220 tatatgaattcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatatattaatcataa 32288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 1839891 - 1839771
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||| ||| ||||||||| | ||| ||||||| |||||| |  | || ||||||| ||||||||||| |||| ||||||||| |||||| |    
T  1839891 atttgggggaacttaaaaattgtattggaggagggttttggggggtttaagagggtttatatgaattcttcaaatttaatatatgttgttataatatttt 1839792  T
Q  207 taaagtaaaaaacatattaat 227  Q
    |||| | ||| | ||||||||    
T  1839791 taaaattaaacatatattaat 1839771  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 1942067 - 1941999
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  1942067 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 1941999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 3404588 - 3404520
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  3404588 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 3404520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 9054525 - 9054457
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| |||||  |||| ||||  |||||||| |||||||||||||| ||||| |||||||||||||    
T  9054525 tatatgaattctttcaatttaatatttgttgttataatattcttaaagttaaaaatatattaatcataa 9054457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 13258553 - 13258657
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatact 263  Q
    ||||||| |||||||||| ||||  ||||| ||| |||| ||||||| | ||||| ||||||||| ||| |||| |||| |  |||| || |||||||||    
T  13258553 tatatgaattcttcaaatccaatctatgttcttagaatactcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatact 13258652  T
Q  264 ctttc 268  Q
    |||||    
T  13258653 ctttc 13258657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 31297410 - 31297294
Alignment:
Q  116 aactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaa 215  Q
    |||||||| ||||||||| | ||| ||||||| ||||| |   | || ||||||| || ||||||||||||  ||||| ||| |||||||||||| | ||    
T  31297410 aactaaaaaattgtattggaggagggttttggggggttatggagggtttatatgaatttttcaaattcaatctatgttattataatattcttaaaattaa 31297311  T
Q  216 aaacatattaatcataa 232  Q
    ||  |||||||||||||    
T  31297310 aagtatattaatcataa 31297294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 34272582 - 34272650
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  34272582 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 34272650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 25033390 - 25033515
Alignment:
Q  107 atttagggtaactaaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattct 206  Q
    |||| ||| |||| ||| |||||||||   ||| ||||||| ||||| |  || || ||||||| || ||||||||| ||  ||||||||| ||||||||    
T  25033390 atttgggggaactcaaaaattgtattgggggagggttttggggggttatgaggggtttatatgaatttttcaaattcgatctatgttgttataatattct 25033489  T
Q  207 taaagtaaaaaacatattaatcataa 232  Q
    |||| | ||||  |||||||||||||    
T  25033490 taaaattaaaagtatattaatcataa 25033515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 29612013 - 29612126
Alignment:
Q  119 taaaatattgtattgaatgagagttttggagggttttatggagtctatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaa 218  Q
    ||||| |||||||||  |||| ||||||| ||||| |   | || ||||||| || |||||||| |||  ||||||||| |||||| ||||| | |||||    
T  29612013 taaaaaattgtattgggtgagggttttggggggttatgaagggtttatatgaatttttcaaattaaatctatgttgttataatattattaaaattaaaaa 29612112  T
Q  219 catattaatcataa 232  Q
     |||||||||||||    
T  29612113 tatattaatcataa 29612126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 36102893 - 36102836
Alignment:
Q  175 ttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  36102893 ttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 36102836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 43733134 - 43733069
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatca 229  Q
    ||||||| || || |||||||||  ||||||||| |||||||||||| | ||||| ||||||||||    
T  43733134 tatatgaatttttaaaattcaatctatgttgttataatattcttaaaattaaaaatatattaatca 43733069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 2474781 - 2474713
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  ||||||| |||||    
T  2474781 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaaccataa 2474713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 7080006 - 7079930
Alignment:
Q  166 tatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgattt 242  Q
    ||||| ||||||||||| | |  ||||||||| |||||| ||||| | ||||| ||||||||||||| |||| ||||    
T  7080006 tatgaattcttcaaatttagtctatgttgttataatatttttaaaattaaaaatatattaatcataagcattaattt 7079930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 11877008 - 11876960
Alignment:
Q  184 aatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  11877008 aatatatgttgttataatattcttaaacttaaaaatatattaatcataa 11876960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 11892015 - 11891967
Alignment:
Q  184 aatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    |||| ||||||||| |||||||||||| | ||||| |||||||||||||    
T  11892015 aatatatgttgttataatattcttaaacttaaaaatatattaatcataa 11891967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 13537417 - 13537513
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactctttc 268  Q
    ||||||||||| |||  ||||  ||| |||||||||||| | ||||| ||||||||||||| |||| |||| |  |||| || |||| |||||||||    
T  13537417 ttcttcaaatttaatcgatgtaattataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttc 13537513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 13626965 - 13627061
Alignment:
Q  172 ttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcattgatttgtagttctttagaaaaatactctttc 268  Q
    ||||||||||| |||  ||||  ||| |||||||||||| | ||||| ||||||||||||| |||| |||| |  |||| || |||| |||||||||    
T  13626965 ttcttcaaatttaatcgatgtaattataatattcttaaaattaaaaatatattaatcataagcattaatttattattctctaaaaaattactctttc 13627061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 13865106 - 13865038
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || |||||||| |||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  13865106 tatatgaatttttcaaatttaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 13865038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 34148593 - 34148525
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||| ||| |||||||||||| | ||||  |||||||||||||    
T  34148593 tatatgaatttttcaaattcaatctatgtttttataatattcttaaaattaaaagtatattaatcataa 34148525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 38404408 - 38404476
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| ||||||||| | |||  || | |||| |||||||||||| ||||||| |||||||||||||    
T  38404408 tatatgaattcttcaaaattaatttatatggttataatattcttaaaataaaaaatatattaatcataa 38404476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 1645 - 1713
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||| ||||  ||||||||| |||||||||||| | ||||| |||||||||||||    
T  1645 tatatgaatttttcaaatccaatctatgttgttataatattcttaaaattaaaaatatattaatcataa 1713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 35469 - 35401
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataa 232  Q
    ||||||| || ||||||||||||  ||||||||| |||||||||||| | ||||  |||||||||||||    
T  35469 tatatgaatttttcaaattcaatctatgttgttataatattcttaaaattaaaagtatattaatcataa 35401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 17521 - 17456
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcat 230  Q
    ||||||| ||||||||||| |||| ||||||||| |||||| ||||| | ||||| |||||||||||    
T  17521 tatatgaattcttcaaatttaatatatgttgttataatattgttaaaat-aaaaatatattaatcat 17456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 12273 - 12200
Alignment:
Q  164 tatatgatttcttcaaattcaatacatgttgttaaaatattcttaaagtaaaaaacatattaatcataatcatt 237  Q
    ||||||| ||||||||||| |||  ||||||||| |||||| ||||| | ||||| ||| ||||||||| ||||    
T  12273 tatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatatagtaatcataagcatt 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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