View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_high_12 (Length: 242)
Name: NF4595_high_12
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 34651780 - 34651560
Alignment:
| Q |
18 |
ttcaaaagacaagcatgtaactgcttcacacgtaatagggacttacaaacgttggtgagttcagaatggagccagtgaaactgaatcaacattaattatt |
117 |
Q |
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| T |
34651780 |
ttcaaaagacaagcatgtaactgcttcacacgtaatagggacttacaaacgttggtgagttcagaatggagccagtgaaactgagtcagcattaattatt |
34651681 |
T |
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| Q |
118 |
atggtaacaacgtaaactctgtgtgtgatttatgtgatagtgaaaacaacaacatgaacaatcacaatataggtttggttaaatggaatggagggaaggg |
217 |
Q |
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| T |
34651680 |
atggtaacaacgtaaactctgtgtgtgatttatgtgatagtgaaaacaacaacatgaacaatcacaatataggtttgg----atggaatggagggaaggg |
34651585 |
T |
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| Q |
218 |
ggagggagaaatgttaaaatattgt |
242 |
Q |
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| T |
34651584 |
ggagggagaaatgttaaaatattgt |
34651560 |
T |
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