View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_high_5 (Length: 395)
Name: NF4595_high_5
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 141 - 368
Target Start/End: Original strand, 30546551 - 30546778
Alignment:
| Q |
141 |
ttccattaaagaattcctttcggaaaaaatcagagctctcatcatgtttgaattttgcaggatatcctttctcgatctttgtaatttcctatttatatat |
240 |
Q |
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| T |
30546551 |
ttccattaaagaattcctttcggaaaaaattagagctctcatcatgtttgaattttgcaggacatcctttctcgatctttttaatttcctatttatatat |
30546650 |
T |
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| Q |
241 |
agattccaacaaaccataacaaacttagcaataaatatgaataattaccatacaaatacgatcaaagcgaataaacacacaaaatgttatagaactttta |
340 |
Q |
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| T |
30546651 |
agattccaacaaaccataactaacttagcaataaatatgaataattaccatacaaatacgatcaaagcgaataaatacacaaaatgttatagaactttta |
30546750 |
T |
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| Q |
341 |
atgtaaaattgaaaagaggggaaaggaa |
368 |
Q |
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| T |
30546751 |
atgtaaaattgaaaagaggggaaaggaa |
30546778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 30556994 - 30557098
Alignment:
| Q |
45 |
ggtctggaagcggaatactccgaacaagaagagttactccatttccagaaataagaggggccat---ttcttctttattccaatgcaagaaggtcatcct |
141 |
Q |
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||||||||| ||| | ||||||||||||||| || |||| ||||||| |||| ||||||||| ||| ||||||||| |||||||| |||||||| |
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| T |
30556994 |
ggtctggaatcggtaatctccgaacaagaagaattgctccttttccagcaatagcaggggccatctcctctcctttattccggtgcaagaaagtcatcct |
30557093 |
T |
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| Q |
142 |
tccat |
146 |
Q |
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||||| |
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| T |
30557094 |
tccat |
30557098 |
T |
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