View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_high_6 (Length: 359)
Name: NF4595_high_6
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 7423889 - 7423560
Alignment:
| Q |
19 |
ataggcgtgtgtcaaagggtggaaagattgtagaactaaacattaacgtnnnnnnnnn-taaactatcgttgatataaatctaaaattatacca------ |
111 |
Q |
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| T |
7423889 |
ataggcgtgtgtcaaagggtggaaagattgtagaactaaacattaacgtaaaaaataaataaacaatcgttgatataaatctaaaattataccatataat |
7423790 |
T |
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| Q |
112 |
atatatatatcaggagccaaagtataaatttattacaaaacactaggtacagcatgtacctagtctgaaaagaaatctaagcaatcaacttattttataa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423789 |
atatatatatcaggagccaaagtataaatttattacaaaacactaggtacagcatgtacctagtctgaaaagaaatctaagcaatcaacttattttataa |
7423690 |
T |
|
| Q |
212 |
tatattaattcataagtaagtgtagtctttgccatgcatcatgaataaaaagtaaccaatgctccaccaaccataaccgtcacctgtgtattaggccgca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423689 |
tatattaattcataagtaagtgtagtctttgccatgcatcatgaataaaaagtaaccaatgctccaccaaccataaccgtcacctgtgtattaggccgca |
7423590 |
T |
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| Q |
312 |
aaagctaccatcggttgacaacttggcttc |
341 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7423589 |
aaagctaccatcggttgacaacttggcttc |
7423560 |
T |
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