View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4595_low_1 (Length: 665)
Name: NF4595_low_1
Description: NF4595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4595_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 29 - 647
Target Start/End: Original strand, 49552654 - 49553267
Alignment:
| Q |
29 |
tgtaacatctgctaccagattaccgaaatgcagttatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcagg |
128 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552654 |
tgtaacatctgctactagattaccgaaatgcagtcatgacaaatgtgtaggccatgggtacatcgttacctctacatgaaatatatgttggttcagcagg |
49552753 |
T |
|
| Q |
129 |
ttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttga |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552754 |
ttcaatattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaaagtctgaacattgtagcaatgtttttga |
49552853 |
T |
|
| Q |
229 |
agcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49552854 |
agcaacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatctcttgttcttgcagtgttatgtttttaccat |
49552953 |
T |
|
| Q |
329 |
gtcttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttccatt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49552954 |
gtcttccatgttgacagtaacagaagataagctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttggaatttccatt |
49553053 |
T |
|
| Q |
429 |
catttatataaatttagatactcgcg---nnnnnnnnntcattgtaaatacatgaaactcaagcattgactacgactgtgctcttttaaacaggacatta |
525 |
Q |
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| T |
49553054 |
cattt------atttagatacttgcgagaaaaaaaaaatcattgtaaatacatgaaactcaagcattgactacgaccgtg--cttttaaataggacatta |
49553145 |
T |
|
| Q |
526 |
tattttcccaagcagaacacattctagattgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
625 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49553146 |
tatcttcccaagcagaacacattctagattgtgcatgaaaacttcgatgaagagatagagggggtccagaacaatgagagatggggttatgtgaaggtta |
49553245 |
T |
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| Q |
626 |
cattggacaaaaatgttcttct |
647 |
Q |
| |
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|||| |||||||||||||| |
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| T |
49553246 |
acatggagaaaaatgttcttct |
49553267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 49537536 - 49537730
Alignment:
| Q |
232 |
aacatttgtagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttgcccatctcttgttcttgcagtgttatgtttttaccatgtc |
331 |
Q |
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| T |
49537536 |
aacatttgaagcaatgttaggtagcataatccagaataacttctgtaaaggatcaatttggccatcccttgttcttgtggtgttttgtttttaccatgtc |
49537635 |
T |
|
| Q |
332 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttcca |
426 |
Q |
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| T |
49537636 |
ttccatgttgacagtaacagaagataagctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttggaatttcca |
49537730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 546 - 625
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
546 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
625 |
Q |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 49537360 - 49537541
Alignment:
| Q |
29 |
tgtaacatctgctaccagattaccgaaa-tgcagttatgacaaatgtgtaggcc-atgggtacatcgttacctctacatgaaatatatgttggttcagca |
126 |
Q |
| |
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|||||| ||||||| ||||||| |||| ||||||||||| |||||| ||| | | ||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
49537360 |
tgtaacttctgctagtagattactgaaactgcagttatgagaaatgtatagccagaagggtacatcaatacctctaaatgaaatatatgttggttcagca |
49537459 |
T |
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| Q |
127 |
ggttcagtattcgtttaatatattttttctatttgttgtcttgagctactttcacaatgaaaaaattgacacaa-agtctgaacatt |
212 |
Q |
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| T |
49537460 |
gattcaata-tcatataata----ctttccatttgctttcttgagttactttcacaattaaaaaactgatacaagagtctgaacatt |
49537541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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